BAC Information

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BAC

Clone NameMSMg01-111B11
Chromosome2 (Build37)
Map Location 88,354,841 - 88,355,487
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1
Downstream geneOlfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111B11.T7 (MSMg01no111_b11.b1)MSMg01-111B11.TJ (MSMg01no111_b11.g1)
ACCAG323849AG323850
length1,1681,118
length of high quality
(start - end)		686 (121 - 806)639 (84 - 722)
definitionCHROMAT_FILE: MSMg01no111_b11.b1 PHD_FILE: MSMg01no111_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:58 2005CHROMAT_FILE: MSMg01no111_b11.g1 PHD_FILE: MSMg01no111_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAACCTGTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CTCACCTGAGGAATACCCCTTTAGAAAGAGAAGCACCTGAAAAAATGTTC
AACATCCTCCCTCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAACCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTTCATTGTTGGTGGGA
TTGCAGGCTTGTACAAGCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAA
AATTGGACATAGTACTACAGGAGGATCCAGCAATTCCTCTCCTGGGCATA
TATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCC
CCTCAACACACGAATGGATACAGAAAATGTGGTACATCTACACAATGGAG
TACTACTCTGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATG
GATGGACCTGGAAGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGA
ACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTAG
GATACCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAGAAG
AATGAAGACTTAAGTGTGGACACTATGCCCCTCCTTAGAATTGGGTGCAA
AACACCCATGGAAGGAGTTACAAAGACAAAGTTTGGAGCTGAGATGAAAG
GATGGACCATGTAGAGACTGCCATATCCAGGGATCCACCCCATAATCAGC
ATCCAAAAGCTGACACCATTGCACACACTAGCAAGATTTTATCGAAAGGA
CCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACA
GAAATGGATGCTCCCAGCCAGCTAATGGATGGATCACCGGGCTCCCAATG
GAGGAACCAGAATAAAGTACCCCAGGGAACTAAAGGGGAACTGCCAACCC
CAATAGGTGGAAACAACTTTTTGGAACTTACCCCGTACCCCCCAAACCTC
TTGAACTCCTAGCTGGCCTTAGGTTATCCAAAAGAATGCCCCCAAATTGG
CCCCTCTCACGGTGAAAA

NNNNTGAACATTGGATGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCACTTTTATGATCTTTCAAGACTTTTCACATGA
CGGGATGTTCCGTTTTATCAAATGCTTTTTCAGCGTTGAATGAAAGAATA
ATGTGTTTTTTCCCCTTGAGTTTGTTTGTGTAATAGATTACATTGATAGA
TTTACATATATTGAGCCATCCCTGCATCCATGGGATGAAGCCTGCTTGAT
CATGGTTTATGGTGGTTTTCGTACTACTTGGACAGATATCAACAAAATAC
CATCATATAAAACAGTATAAATGCATTTGAAATAAGTGGATGGAAATTGA
AAGATGATGTTAAAATATGTAGGTGGAATAATGAGGCCATAGGACTTTAT
AAAGCACATTTTAATCTTTTTAAAAATTTGTTGTATGTGTACTCATCCCT
TTCCTTCCTTCAAATTCTCCAAAATGCTTCTCCCAGCTCTCCTTCAAATT
CACTTTGTACATTGTTATTGCATGAATATTTGTATATACATCTGCATTGC
TAAATATAACCTGATGAATCCATATAATATTATGTGGATTTATGTTTTCA
TGTCACACTATACCACTGGGACACCTGCTCAACTAAGTTCATAGCAGCTT
TATTCATAATAGCCAGAACTGGAAACAACCTAGATGTTCCTCAAATGAAG
AATGGATGAAGAAACTGTGGTACATATACACAATGAAATACTACTTAGCT
ACTAATAACAAGGACATCATGAAATTTGCAGGAAAACGGACAGAGCTAGA
AAAACTTATTCTGAGAAAGCTAACTGAAATCTATAAAAAAGAACATGCAT
AGTATTCACTTACTTATAAGTAGGATTGATCAAAAAAGTACAAGATAAAC
ATTTCTACATTTCACAGATTCTCCTCCCCCCCCCAAATTTTATATTTTTA
ATTTTTTTTTTTTATGATTAATTTATCCTTTATTTTCTTACCGGGCTACT
TTTCTAGGGAAGAAAAACTTGTGATTCTCCCACCCCCAAAAGTGGAAAAA
ATAATATATTCTTTCCTTTGGTAAAAAAGAGAATGGTTTTTTTTTCTGGT
TAAACCTCCAATTATACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_b11.g1 MSMg01no111_b11.g1 CHROMAT_FILE:
MSMg01no111_b11.g1 PHD_FILE: MSMg01no111_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:58 2005
         (639 letters)



>mm_chr2_88354643_88355681
          Length = 1039

 Score = 1178 bits (609), Expect = 0.0
 Identities = 635/647 (98%), Gaps = 8/647 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagacttttcacatgacgggatgttccgttttatcaaatgctttttcagcgttgaatga 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 199 caagacttttcacatgacgggatgttcagttttatcaaatgctttttcagcgttgaatga 258

                                                                       
Query: 61  aagaataatgtg--ttttttccccttgagtttgtttgtgtaatagattacattgatagat 118
           ||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 259 aagaataatgtggtttttttccccttgagtttgtttatgtaatagattacattgatagat 318

                                                                       
Query: 119 ttacatatattgagccatccctgcatccatgggatgaagcctgcttgatcatggtttatg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttacatatattgagccatccctgcatccatgggatgaagcctgcttgatcatggtttatg 378

                                                                       
Query: 179 gtggttttcgtactacttggacagatatcaacaaaataccatcatataaaacagtataaa 238
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 379 gtggttttcgtactacttggacagatatcaacaaaataccatcatataaaacagtacaaa 438

                                                                       
Query: 239 tgcatttgaaataagtggatggaaattgaaagatgatgttaaaatatgtaggtggaataa 298
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 439 tgcatttgaaataagtggatggaaattgaaagatgatattaaaatatgtaggtggaataa 498

                                                                       
Query: 299 tgaggccataggactttataaagcacattttaatctttttaaaaatttgttgtatgtgta 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgaggccataggactttataaagcacattttaatctttttaaaaatttgttgtatgtgta 558

                                                                       
Query: 359 ctcatccctttccttccttcaaattctccaaaatgcttctcccagctctccttcaaattc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctcatccctttccttccttcaaattctccaaaatgcttctcccagctctccttcaaattc 618

                                                                       
Query: 419 actttgtacattgttattgcatgaatatttgtat----ata--catctgcattgctaaat 472
           ||||||||||||||||||||||||||||||||||    |||  |||||||||||||||||
Sbjct: 619 actttgtacattgttattgcatgaatatttgtatttgtataaacatctgcattgctaaat 678

                                                                       
Query: 473 ataacctgatgaatccatataatattatgtggatttatgttttcatgtcacactatacca 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ataacctgatgaatccatataatattatgtggatttatgttttcatgtcacactatacca 738

                                                                       
Query: 533 ctgggacacctgctcaactaagttcatagcagctttattcataatagccagaactggaaa 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ctgggacacctgctcaactaagttcatagcagctttattcataatagccagaactggaaa 798

                                                          
Query: 593 caacctagatgttcctcaaatgaagaatggatgaagaaactgtggta 639
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 caacctagatgttcctcaaatgaagaatggatgaagaaactgtggta 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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