Query= MSMg01no111_b23.b1 MSMg01no111_b23.b1 CHROMAT_FILE:
MSMg01no111_b23.b1 PHD_FILE: MSMg01no111_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:02 2005
(618 letters)
>mm_chr2_140090503_140091520
Length = 1018
Score = 1069 bits (553), Expect = 0.0
Identities = 572/579 (98%), Gaps = 2/579 (0%)
Strand = Plus / Minus
Query: 42 tctaggggtacagatacttgtcaggcattaacgttctgcaaaattgtgaagttgccctaa 101
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1018 tctaggggtacagatacttgtcaggaattaacgttctgcaaaattgtgaagttgccctaa 959
Query: 102 atcattacaagaaagtggcagattatagtgagtacttctcattattcttttggagggggt 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 atcattacaagaaagtggcagattatagtgagtacttctcattattcttttggagggggt 899
Query: 162 gtttgtttgttgatggttg--tttttttttgtttatttgctttgggttttggttttcggg 219
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 898 gtttgtttgttgatggttgtttttttttttgtttatttgctttgggttttggttttcggg 839
Query: 220 agaaactatcattgtgtacagctttgcctggcctggaactctccatgtaaaccaggcagg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 agaaactatcattgtgtacagctttgcctggcctggaactctccatgtaaaccaggcagg 779
Query: 280 catcaagctcacagagatgtgcctgcttctatttcccaagattgaaggtgtgtgccacca 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 catcaagctcacagagatgtgcctgcttctatttcccaagattgaaggtgtgtgccacca 719
Query: 340 ccctcagcactcataatccatcttaatataaacagagctgaaccttacctcagtgataga 399
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccctcagcattcataatccatcttaatataaacagagctgaaccttacctcagtgataga 659
Query: 400 acacttgcctagcattgacaaaaaatatgggtttgttcaacctcccaacattagaaataa 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 acacttgcctagcattgacaaaaaatatgggtttgttcaacctcccaacattagaaataa 599
Query: 460 aacagacttttaccaagcagtttttaaaatatcaacagcaggtgggaatgggatatggct 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aacagacttttaccaagcagtttttaaaatatcaacagcaggtgggaatgggatatggct 539
Query: 520 tggccgctgaagggctcgttgtgcaagcatgaagaagtaaattcaaactcaaaatccaca 579
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 538 tggcagctgaagggctcgttgtgcaagcatgaagaagtaagttcaaactcaaaatccaca 479
Query: 580 ttctaaaaaaaggagccgggcgtggtggcacatatttgt 618
||||||||||||||||||||||||||||||||| |||||
Sbjct: 478 ttctaaaaaaaggagccgggcgtggtggcacatgtttgt 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_b23.g1 MSMg01no111_b23.g1 CHROMAT_FILE:
MSMg01no111_b23.g1 PHD_FILE: MSMg01no111_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:02 2005
(745 letters)
>mm_chr2_140047432_140048573
Length = 1142
Score = 1268 bits (656), Expect = 0.0
Identities = 727/764 (95%), Gaps = 23/764 (3%)
Strand = Plus / Plus
Query: 2 gatatttcttttgtcagtgtgaaccattaacaagcttacagtcacatttgtagttggtac 61
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gatatttcttttgtgagtgtgaaccattaacaagcttacagtcacatttgtagttggtac 241
Query: 62 acaagcaccagttctttgggcttcaacagagttttcttccaacctcctatgagtagggag 121
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 242 acaagcactagttctttgggcttcaacagagttttcttccaacctcctgtgagtagggag 301
Query: 122 gccttctccactcaggtaaagcatactcctgcagtgctcgaggctttctaagctcatcag 181
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 302 gccttctccactcaggtaaagcatactcctgcagtgctcgaggctttgtaagctcattag 361
Query: 182 acactctcatgtccctaagcaaactgggaagtggagaggtgaaatgaccaaaactatgcc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 acactctcatgtccctaagcaaactgggaagtggagaggtgaaatgaccaaaactatgcc 421
Query: 242 attgttcttggtttttctaaggccagagccatttagtgctgttcagcccacagctcacat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 attgttcttggtttttctaaggccagagccatttagtgctgttcagcccacagctcacat 481
Query: 302 ctcagtccaaaattatcaaagacaattgttaaggacatctgggccaatgcaacaggacgt 361
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
Sbjct: 482 ctcagtccaaaattatcaaagacagttgttagggacatctgggccaatgcaacaggacat 541
Query: 362 tttgagtcttggtttggttgaaactcaagtcaggattaatgaaaggggccaaatggcccc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tttgagtcttggtttggttgaaactcaagtcaggattaatgaaaggggccaaatggcccc 601
Query: 422 aatttgtaatgtgggagtctggacatcctgggctagagttgctgagtgtcaggtcccact 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aatttgtaatgtgggagtctggacatcctgggctagagttgctgagtgtcaggtcccact 661
Query: 482 gtgcaaaggggacagagcttcccactgaacctcagccaaagaagaagggtgctaagggag 541
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gtgcaaagggggcagagctccccactgaacctcagccaaagaagaagggtgctaagggag 721
Query: 542 cctctgagcgtgcttgatctgccatctttgtgttagacaaaaccaaaccaaaccaaacca 601
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 722 cctctgagcgtgcttgatctgccatctttgtgttagacaaaaccaaaccaaaacaaacca 781
Query: 602 aaccaaaccaaaccaaaccaaa---------------ccaaaacaaaa-----gaatggt 641
|| ||||||||| ||||||||| ||||||||||| ||||| |
Sbjct: 782 aaacaaaccaaaacaaaccaaaacaaaccaaaacaaaccaaaacaaaacaaaagaatgct 841
Query: 642 taacagtttgtagaaaggtgctgacagagttaccatttggaataagctttcttgaggtgg 701
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 842 taacagtttgtagaaaggtgctgacagagttaccat---gaataagctttcttgaggtgg 898
Query: 702 ggtgacctgggcctgtgatataacaattttgaacgtagagatca 745
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 ggtgacctgggcctgtgatataacaattttgaacgtagagatca 942
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 745
Length of database: 1142
Length adjustment: 10
Effective length of query: 735
Effective length of database: 1132
Effective search space: 832020
Effective search space used: 832020
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
