BAC Information

Click to search

BAC

Clone NameMSMg01-111E02
Chromosome2 (Build37)
Map Location 19,874,530 - 19,875,168
singlet/doubletsinglet
Overlap genenone
Upstream genePip5k2a, 4930426L09Rik, LOC667521, Armc3, Msrb2, LOC100041196, Ptf1a, LOC100041534, 4921504E06Rik, LOC100041244, Otud1, LOC667564
Downstream geneLOC100041302, LOC433406, LOC654360, LOC667609, Etl4, Arhgap21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111E02.T7 (MSMg01no111_e02.b1)MSMg01-111E02.TJ (MSMg01no111_e02.g1)
ACCAG323973AG323974
length1,1641,210
length of high quality
(start - end)		656 (29 - 684)778 (90 - 867)
definitionCHROMAT_FILE: MSMg01no111_e02.b1 PHD_FILE: MSMg01no111_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:20 2005CHROMAT_FILE: MSMg01no111_e02.g1 PHD_FILE: MSMg01no111_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCAGTGGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCA
AAATATAGAGGAACCCCATTAAAAAACAGCTGTTAGTACATGTTGAAACG
GAACAGCTGCTTAGAAATGACAAAATAAACCCATTAATCATTGTGAGAAA
AATGGTATTCTCACAAACAGAAATAATTTTAATTTTTACAATTATAGTAA
CTAGAAAAGAATGAAAAATGTGCATGTGTTGAACGAGAGGGAATTTATTT
CAAAGCAATTGTAAAATTTCAGATTAAACTATCAGAAGAATGATAAACCC
TTGGGAGCAGGGAGGGGAGGGAGGGGCCACAGAGCGGGGGTTGGGGGGAA
CAAAAGACTAAATTCTTTTTAAATGCTAATGTAGCACTGGTAGAATTTTA
AACACTATCTTTCTTCAATGCATAAAATCTAGTAATTAACATATCAAGTT
ATATGCAAGACAAGTGTGGAAAAATTATAAAACTCTCTGGGTCCACATTA
AAGATTTAAATAAAGAGAACAATGTCATGCTCCTGGGTCAGAATGCTTGT
CTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGT
TGGGGAGGAAAGGGTTTATTTGGCTTATACTTCCATACTGCTGTTCATCA
CCAAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGA
TGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCTTCCCCTGGCTTG
CTCAGCCTGCTCTCTTATAGAACCAAGACTACCAGCGCAGATATGGTCCC
ACCCACCTGGGACCTTTCCCCCTTGATCACTAATTGAGAAAATGCCTTAC
AGTTGGATCTCCTGGAGGCATTTTCCCCAACTGAAGCTCCTTTCTCTGTG
AAAACTCCAGCTGTGTCAAGTTGAACACAAAAACTAGCCAATACAATTGC
TCATTTTTAATAAGACCCCCAGTCTGTTTCTTACAGTGACCCTTGAAATT
CAAGAAAATTTTCCCGAAAAATCCTGAGAAAAGGCTTTCTTACTTACCCT
AGGCCATGGCAAAAACCTGGCATGGTGTTTTTTAGAGGAATAAAAAACTT
GAAGAAAATTGTATGGGGAAAAAAAATAGAAGGGTTCTCTCCCCGGGTGG
ACCTCCCCCCCCCC

CCAATAAATTNNNTAAACATGTGAGGCTGGGGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAAAAAGAAATACAGGA
AAACAGAACCAAACAGGTGGACGTAAATGACTAAAACCATCCAACACATA
AAAAGGGAAGTAGACACAATAAAGAAAACACAAAGTAAAACAACTCTGGA
GATAGAAACCCTAGGAAAGAAATCAGGAACCATAGATTCGAGCATCAGCA
ACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCATAGATTCCATAG
ATAGCATCAGCACAACATTCAAAGAAAATGCAAAAAGGTCCTAACTCAAA
ACATCCAGGAAATCCAAGACACAATGAGAAGACCAAACCTAAGGATAATA
GGTATAGATGGCAATGAAGATTTTCATCTTAAATGGCCAGCAAATATATT
CAACAAAATTATAGAAGAAAACTTCCCAAACCTAAAGAAAGAGATGCCCA
TGAACATGGAAGAAGCCTACAGAACTCCAAATAGACTGGCCCAGAAAAGA
AATTCCTCCTGACACATAATAATCAGAACAACAAATGCACTAAATAAAGA
TAGAATATTAAAAGTAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCA
GGCCTATTATAATTACTCCAGACTTCTCACTAGAGACTATGAAAGTCAAA
AGATCCTGGGCAGAAGTTATGCAGACCCTAAGAAAACAAAAATGACAGCC
CAGGCTACTATACCCAGCAAAACTTTCAATTACCATAGATGGAAAAACCA
AAGTATTCCATGATAAAACCAAATTCACACAATATCTTTCCACGAATCGA
GCCCTTCAAAGGATTATAAAGGGAAAACACCAACATAAGTACCGAAACTA
CCCCATAGAAAAAGCAAGAAAGTAATCCTTTTAACAAACCTAAAAAGAAG
ACAGCCCTCAAGAAACAGAATCCCAATTTTTAACAACCACCGAAAAAAAA
AATTAGCCTGGAATCCAACCATTTACCTAATTACTAATTACCCATTACCC
ATTTTTAACCAACTCCTTAAACACCCAAATGGAACTTCCAATTCCCCCCC
CTATTAAAAAAAGAACCTTAGGACCTTAACCCGGAACTGGGGTTTTACCT
CCAAACACAGGAAACCCCACAACCATTTTTGGCCTGGTTTTATACACGCG
AGAAAACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_e02.b1 MSMg01no111_e02.b1 CHROMAT_FILE:
MSMg01no111_e02.b1 PHD_FILE: MSMg01no111_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:20 2005
         (656 letters)



>mm_chr2_19874452_19875505
          Length = 1054

 Score = 1156 bits (598), Expect = 0.0
 Identities = 631/644 (97%), Gaps = 8/644 (1%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattcaaaatatagaggaac--c-ccattaaaaaacagctgttagtacatgttgaaacg 72
           |||||||||||||||||||||  | ||   | |||||||||||||||||||||||||| |
Sbjct: 717 gaattcaaaatatagaggaacgtcacc---agaaaacagctgttagtacatgttgaaatg 661

                                                                       
Query: 73  gaacagctgcttagaaatgacaaaataaacccattaatcattgtgagaaaaatggtattc 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gaacagctgcttagaaatgacaaaataaacccattaatcattgtgagaaaaatggtattc 601

                                                                       
Query: 133 tcacaaacagaaataattttaatttttacaattatagtaactagaaaagaatgaaaaatg 192
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tcacaaacagaaataattttactttttacaattatagtaactagaaaagaatgaaaaatg 541

                                                                       
Query: 193 tgcatgtgttgaacgagagggaatttatttcaaagcaattgtaaaatttcagattaaact 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tgcatgtgttgaacgagagggaatttatttcaaagcaattgtaaaatttcagattaaact 481

                                                                       
Query: 253 atcagaagaatgataaacccttgggagcagggaggggagggaggggccacagagcggggg 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atcagaagaatgataaacccttgggagcagggaggggagggaggggccacagagcggggg 421

                                                                       
Query: 313 ttggggggaacaaaagactaaattctttttaaatgctaatgtagcactggtagaatttta 372
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tt-gggggaacaaaagactaaattctttttaaatgctaatgtagcactggtagaatttta 362

                                                                       
Query: 373 aacactatctttcttcaatgcataaaatctagtaattaacatatcaagttatatgcaaga 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aacactatctttcttcaatgcataaaatctagtaattaacatatcaagttatatgcaaga 302

                                                                       
Query: 433 caagtgtggaaaaattataaaactctctgggtccacattaaagatttaaataaagagaac 492
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caagtgt-gaaaaattataaaactctctgggtccacattaaagatttaaataaagagaac 243

                                                                       
Query: 493 aatgtcatgctcctgggtcagaatgcttgtcttagtcagggtttctattcctgcacaaac 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aatgtcatgctcctgggtcagaatgcttgtcttagtcagggtttctattcctgcacaaac 183

                                                                       
Query: 553 atcatgaccaagaagcaagttggggaggaaagggtttatttggcttatacttccatactg 612
           |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 182 atcatgaccaagaagcaagttggggaggaaagggtttattcggcttacacttccatactg 123

                                                       
Query: 613 ctgttcatcaccaaaggaagtcaggactggaactcaagcaggtc 656
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ctgttcatcaccaaaggaagtcaggactggaactcaagcaggtc 79


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1054
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1044
Effective search space:   674424
Effective search space used:   674424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |