BAC Information

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BAC

Clone NameMSMg01-111H06
Chromosome2 (Build37)
Map Location 41,196,616 - 41,197,309
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC666531, LOC100042629
Downstream geneLOC625094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111H06.T7 (MSMg01no111_h06.b1)MSMg01-111H06.TJ (MSMg01no111_h06.g1)
ACCAG324119AG324120
length1,1461,150
length of high quality
(start - end)
693 (75 - 767)295 (457 - 751)
definitionCHROMAT_FILE: MSMg01no111_h06.b1 PHD_FILE: MSMg01no111_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:48 2005CHROMAT_FILE: MSMg01no111_h06.g1 PHD_FILE: MSMg01no111_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAACATTGGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTC
AACTCTGTATGTATACCATTAAAAATAAATATATTGAAATGCAGTAATCA
AGACTACTAATAAATGATTTGAATATATACTATTAATCTATCATCTATCT
CTCTATCTTCTATCTTTGTATTTATGCCTATAATTTTTTTTGGATACAAA
TTCATCCTGGTAGGTAAAACTGTTATTTGTCTGAAATCTACATTAGTAAA
ATGAAAGAGATTCTTTCTCTCATCTGGAAGTTAATTAAAGCTAAGACCTG
TTGTTTTCCTCAATGGATTTTAGAAGTATGTTCTATGCACATATGTGTGA
GAGTCACCAGGACTCAATACAACTTAAAAGATAATATAAATTTATCAATA
TCTGAAGTCCAATTTGAGTAATGTATAATTTCAAATATGCTATGTATTCT
TCATGAAGGGCAGGTTAGAACTGTAGTAGTAATCATATGTCTACGGATCC
AAAGGTTATGATAGGAAGGAATATTGTAACACATCCTTTTGGAAGGCTTT
GGAATAGGTTAAACATGACCTATGACATTTAAAGGTGACTTACAGAATAA
ATAGAATCCTTTTATTATTGTTTAAAGTGTTTTGGGATTTGTTTTCATAC
TTTACAGTATCTACTCACCCACACTGGTGCAGCTTTCCCCATCAGTCCCC
AACGCCCAGCCTTCATAGCAGGAGCACTTGACCATATGTTTTTGCTGCTC
ACACACTTGGCTGCACCTCAGGTGGGAGGCACAGTAGTCCACGATTTCAC
AGGTTCTATTGTCTTTCTTGAGCTGATGTCCCTTCTGGGCAGGAACAGAC
AATTCCTCTTCCAGGAACAACAGAACAGTGGTTGCTACACCCTCCATTGT
TCAGAGAACACTCATCTGTAAAGGGACAGAATGCTTTTGGTCAGAACATC
TTTTCTTAGTCCATACTAATCACTGATTGAATTCCCCAAACCTGGAAATT
AAACTTGGACCCTTTTTTGACCCAATATAATTCAAGCCCCCCCCACTCCA
TGGAACACTAAATAATGGTTGGTAACAAATTTTAATATCCAAAATTTTTT
TTTAAATGGGTAAAAAATTGGTAAAAGGCAAATTTTCTCTTTCTTA
NCTTAAACATTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXGCAATGGAGGCCCCCCANNAGAGNNANGAAAANAC
NCNAACCCTTTAAAACCCCCCCNNNNANANCCAAGNGGNAACGANAGNNC
NACNGGAACANCNCAGGAGAAANAACNCCACCCAACGGAGCCACGAGNNN
AANCAGACCAGAAGCCANNNNCACNCGGNNCAGGGNNCACCCNGGACGGA
AGCCNGAAGAAGNCGGAGAAAANNAGGGNGAGANCANANGGCANCAGCAG
GAACNNGGGNNCNNGGCCCATTTTTANGAAAGGAACGGGGAGACAACCNN
AACNAAAGGGNGNGCCNAANAGAGNACANNNNCANNCAANATTTTTTTTT
ANNNAGCNCAANNNANNNCCCACANAAAAAAAAGAAACCCCTCATTTCAT
ATCTATAACAAATGCTTACTTCTCTTCATCTATCCTTACCATCTCATCTT
GGGTTATATCAAAGGTTTTTTTGGTTTTTTTTTAATAATTAAGAATTTTA
AATGTTTTTTAATTAGGTATTTAGCTCATTTACATTTCCAACGCTATACC
AAAAGTCCCCCATACCCACCTCCCCACTTCCCTACCCACTCACTCCCCCT
TTTTGGCCCTGGCGCCCCCCCGCACTGGGGCATATAAAGTTTGCAAGTCC
AATGGGCCTCTCTTTGCAGTGATGGCCGACTAGGTTTTAATGAAGCTTAC
AGTAGATTTTCTATCTCTGAAACTAACTGAAGTAATCAATTGAATAATCC
TCCTGACCACAATTACCCAGATTAAAGAATATTTCCATTTTTTTTTCCAA
ATTGTTTCTTGGCCACTGCGGCACATTAGAATCAATATCCTCAAAGAAAA
AATTGTTCGGATTATACTATCAATAAAACAATTTAGAAAAAAGATATTAA
GGTAGCTGAAACCCCCTGTGGGGAGTCCATTAAGGTAAGTAAAAAAGAAG
TATACCCCCAGTTTTCTATCCAAATAAATTTAAAATTTTTTCCCCAATTA
CTTTTTACCTGGAAAATGGGCCTTATTGAAAATTTTCCAAAGGGCACTTT
CCCTTTCGGGCCAAGACTAAAACACTCCTCTGGAGGGTTTTTTCTCCCCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_h06.b1 MSMg01no111_h06.b1 CHROMAT_FILE:
MSMg01no111_h06.b1 PHD_FILE: MSMg01no111_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:48 2005
         (693 letters)



>mm_chr2_41196416_41197509
          Length = 1094

 Score = 1295 bits (670), Expect = 0.0
 Identities = 688/694 (99%), Gaps = 1/694 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaatatattgaaatgcagtaatcaagactactaataaatgatttgaatatatactatt 60
           ||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||
Sbjct: 201 ataaatatattgaaatgcagtaatccagactaaaaataaatgatttgaatatatactatt 260

                                                                       
Query: 61  aatctatcatctatctctctatcttctatctttgtatttatgcctataatttttttt-gg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 aatctatcatctatctctctatcttctatctttgtatttatgcctataatttttttttgg 320

                                                                       
Query: 120 atacaaattcatcctggtaggtaaaactgttatttgtctgaaatctacattagtaaaatg 179
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 atacaaattcatcctggtaggtaacactgttatttgtctgaaatctacattagtaaaatg 380

                                                                       
Query: 180 aaagagattctttctctcatctggaagttaattaaagctaagacctgttgttttcctcaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagagattctttctctcatctggaagttaattaaagctaagacctgttgttttcctcaa 440

                                                                       
Query: 240 tggattttagaagtatgttctatgcacatatgtgtgagagtcaccaggactcaatacaac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggattttagaagtatgttctatgcacatatgtgtgagagtcaccaggactcaatacaac 500

                                                                       
Query: 300 ttaaaagataatataaatttatcaatatctgaagtccaatttgagtaatgtataatttca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaaagataatataaatttatcaatatctgaagtccaatttgagtaatgtataatttca 560

                                                                       
Query: 360 aatatgctatgtattcttcatgaagggcaggttagaactgtagtagtaatcatatgtcta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatatgctatgtattcttcatgaagggcaggttagaactgtagtagtaatcatatgtcta 620

                                                                       
Query: 420 cggatccaaaggttatgataggaaggaatattgtaacacatccttttggaaggctttgga 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cggatccaaaggttatgataggaaggaatattgtaacacatccttttggaaggctttgga 680

                                                                       
Query: 480 ataggttaaacatgacctatgacatttaaaggtgacttacagaataaatagaatcctttt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataggttaaacatgacctatgacatttaaaggtgacttacagaataaatagaatcctttt 740

                                                                       
Query: 540 attattgtttaaagtgttttgggatttgttttcatactttacagtatctactcacccaca 599
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 741 attattgtttaaagtgttttgggatttgttttcatagtttacagtatctactcacccaca 800

                                                                       
Query: 600 ctggtgcagctttccccatcagtccccaacgcccagccttcatagcaggagcacttgacc 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctggtgcagctttccccatcagtccccaacgcccagccttcatagcaggagcacttgacc 860

                                             
Query: 660 atatgtttttgctgctcacacacttggctgcacc 693
           ||||||||||||||||||||||||||||||||||
Sbjct: 861 atatgtttttgctgctcacacacttggctgcacc 894


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1094
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1084
Effective search space:   740372
Effective search space used:   740372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)