BAC Information

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BAC

Clone NameMSMg01-111K12
Chromosome2 (Build37)
Map Location 120,575,342 - 120,740,067
singlet/doubletdoublet
Overlap geneTtbk2, Ubr1
Upstream geneItpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1
Downstream geneTmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111K12.T7 (MSMg01no111_k12.b1)MSMg01-111K12.TJ (MSMg01no111_k12.g1)
ACCAG324272AG324273
length1,2211,235
length of high quality
(start - end)		407 (40 - 446)633 (125 - 757)
definitionCHROMAT_FILE: MSMg01no111_k12.b1 PHD_FILE: MSMg01no111_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:15 2005CHROMAT_FILE: MSMg01no111_k12.g1 PHD_FILE: MSMg01no111_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,575,342 - 120,575,744)(120,739,435 - 120,740,067)
sequence
NAATCTATGCGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTTGAAGCCTATTGCCTGTTAAATAGACCTCAAATCTTACATTTTCATTT
CCATCCCGTAACCAAAATTTGCTACAGGCAAAATGTGCCTAACCGATCAA
AAGCATAAGTCATTATACTACTTATATACATTATCTGTAAAGTTTAACTT
TCCTTTTGTCTTGGGAAACCTGAGTGCCACAGGGCAAAATGATAAATTTA
CTTATGTATTTTCCACTGTACCTTATCTCTGTGTGCCCCTGTCCCTGCCT
AAAGTTGCCTTTGTACCTCTACACTGTTGCCTCAAAGAGCTCACCTTCTA
ACAAAGGCACTGCAAATATGTTCATTTTACAACTGTATCTGGTATTAGGA
AGTTAGCAATTCTCAAAGACAAAGACTTTGCTGTAGAATTTGTAATGATA
TTACCCCACCCACATTAAGAATGAGGATACAAACCTAAGATATGAACAAA
TGGAAACTCAATGGTGTCAGTGTTATAAAAACACAAGAATTTATTTGAAA
GAATTAACTTAATAGAGATAAAATATAATAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTATTCCCTTTTCTTCTTTTTTTTTTTC
TTTNCTTTTTCCCTCCTTTCTTTTCTTTCTTCATTTTTTTATTTTTCTTT
TTTTTTCTATTTTCTCTTTCTTTTTTCTTTTTTTTTCTTTAATTTCTTCT
TTCCTTCTTTTTTTCTTTTTTTTTTTTTATTTTTTATTTATATTTTTATT
TTATTTATTTTCTTTTTTTTCCTTTTTTCTCTTTATTTTATTTTTCTCTT
CTTATTATACTTTTTTTTTTTTTTTTTTATTCTTATTTTTTCTCTTTTTT
GCTTTTTCTTCTTTTATTATTTTTTTCTTATTTTTTTTTTTTATTTTTCT
TTCTTGTCATCTTTTTTTTTTTTACTCTTTCATTTTCCCTTTTTTTTTCT
CTTATTTTTCCTAATTCTTTTTCTATTTCATTTTTTTCTTCTTTTTCATC
TCCTTCTTTCCTTTTTTTTTTTTTTTGTATCTTCCTTAATTTTTTCCTAT
TCTTTATTTTTTTTTTTTTCTCTATTCTTATTCTCTTCTATATCTACTCA
TATTTTCTCTGTTTTACTGTTCTCTCCTCTACTTTCTTTCTTTTCTTATA
TTCTTCGATTCTTCTTATTCT

GGCCTATTCTNTACGCAATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACCTTTAAGGCTTTGGTCATGGTAG
GCCCAGGAATTGTGATCCTATAGGAAAGTAAAGAAACCTCATGAAAAAAT
ATACACAAGCATGGAAGGTGTCCCTGCTCTTCCTTCTCCTTTTCCAACAG
TCTGGCAGAAAGCAAGGGCAGGATTCCCTCTCTCCCCGGCCTTCCTAGTT
CTGCTCTCCCATCCTTCCACTCTCTGCCCCACTCCGCCCTCCCCTGCTGT
TCAGCCATGGCTGGCTGGGGAGAATGGCATGGTAATTATGGCTAAGGCTC
CCTCTCCCTTCTTGAGAGATGCTGCATCATACCTTTAAAGATGGTGTGAG
TTCTGTTATACCAAGGAGTGAAGACAAGTTTAAGACCTACAGAATGTCAT
CTGTCCTTATTTCCTTTTGTAATACTTGTGGTTGAGATTTTGTAGAAATT
TAATTATGATGTACCCTGTACTTTTGTAATTGGAGCACATTATGGTGATT
AAAGGTAACTGTATTCCTGGCAAGCCTCTTATTGATTGCATTAACTGCAA
AGATGCTGGAAGTAGAATCCATTTGATTGATGAGCGTGTAATCTATTCCT
ATGCTATTTTAGGTACTACTCTCTAACTCTTTTTATTTGAATTCCAGTTA
AAAAGTTTCCAACATATCTTAGCTCCTTCTCCAAGTTAGAAAAAAGAAAA
AGGAAACAAACAAAACCAAAGTCTCCTCATGCTAGTGATAAGTCCATAAC
ACATTGCAACATGGCATTTTTGTGTTTTTTTTTTTGTTTGTTTTTGTTTT
GTTTTTTTCTTTTCTTTCCTTTGAAAACAGGGATTTCTTTGTTAAGCCTT
GACTGTCCCGGAAACTTTGTTCTGTTAAACAATCTTGTTCCTTGAATTCA
CAGAAAATCCACTATTCCCTGGCCTTCTCGATAGTTAAGAATTAATAGTC
ATTGTTTTCTCCTCCTCCCCATTGCTTCCCTGTTTTTTACTAGTCATTAA
TATTATTTTTTGTTTTGCTCTTGGTTTTCTCACTTGAGTCCTTCTGTATT
TTAACCTCCTCTAATACGTGGTATATTGTCTTAATACAGGGTAATCTTCT
TCTCACCTTATATCTCACCACTCTTATAAGTCGCCTCTCCTAAACGTTCA
TTTCCTTCTCTTCTATCTATCCTCTACCTTATTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_k12.b1 MSMg01no111_k12.b1 CHROMAT_FILE:
MSMg01no111_k12.b1 PHD_FILE: MSMg01no111_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:15 2005
         (407 letters)



>mm_chr2_120575138_120575944
          Length = 807

 Score =  741 bits (383), Expect = 0.0
 Identities = 398/403 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttgaagcctattgcctgttaaatagacctcaaatcttacattttcatttcca 64
           |||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttgaagcctattgattggtaaatagacctcaaatcttacattttcatttcca 264

                                                                       
Query: 65  tcccgtaaccaaaatttgctacaggcaaaatgtgcctaaccgatcaaaagcataagtcat 124
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcttgtaaccaaaatttgctacaggcaaaatgtgcctaaccgatcaaaagcataagtcat 324

                                                                       
Query: 125 tatactacttatatacattatctgtaaagtttaactttccttttgtcttgggaaacctga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatactacttatatacattatctgtaaagtttaactttccttttgtcttgggaaacctga 384

                                                                       
Query: 185 gtgccacagggcaaaatgataaatttacttatgtattttccactgtaccttatctctgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgccacagggcaaaatgataaatttacttatgtattttccactgtaccttatctctgtg 444

                                                                       
Query: 245 tgcccctgtccctgcctaaagttgcctttgtacctctacactgttgcctcaaagagctca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgcccctgtccctgcctaaagttgcctttgtacctctacactgttgcctcaaagagctca 504

                                                                       
Query: 305 ccttctaacaaaggcactgcaaatatgttcattttacaactgtatctggtattaggaagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccttctaacaaaggcactgcaaatatgttcattttacaactgtatctggtattaggaagt 564

                                                      
Query: 365 tagcaattctcaaagacaaagactttgctgtagaatttgtaat 407
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagcaattctcaaagacaaagactttgctgtagaatttgtaat 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no111_k12.g1 MSMg01no111_k12.g1 CHROMAT_FILE:
MSMg01no111_k12.g1 PHD_FILE: MSMg01no111_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:15 2005
         (633 letters)



>mm_chr2_120739235_120740267
          Length = 1033

 Score = 1201 bits (621), Expect = 0.0
 Identities = 630/633 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagtaaagaaacctcatgaaaaaatatacacaagcatggaaggtgtccctgctcttcct 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 aaagtaaagaaagctcatgaaaaaatatacacaagcatggaaggtgtccctgctcttcct 774

                                                                       
Query: 61  tctccttttccaacagtctggcagaaagcaagggcaggattccctctctccccggccttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tctccttttccaacagtctggcagaaagcaagggcaggattccctctctccccggccttc 714

                                                                       
Query: 121 ctagttctgctctcccatccttccactctctgccccactccgccctcccctgctgttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ctagttctgctctcccatccttccactctctgccccactccgccctcccctgctgttcag 654

                                                                       
Query: 181 ccatggctggctggggagaatggcatggtaattatggctaaggctccctctcccttcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ccatggctggctggggagaatggcatggtaattatggctaaggctccctctcccttcttg 594

                                                                       
Query: 241 agagatgctgcatcatacctttaaagatggtgtgagttctgttataccaaggagtgaaga 300
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 593 agagatgctgcatcatacctttaaagatggtgtgagttctggtaaaccaaggagtgaaga 534

                                                                       
Query: 301 caagtttaagacctacagaatgtcatctgtccttatttccttttgtaatacttgtggttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 caagtttaagacctacagaatgtcatctgtccttatttccttttgtaatacttgtggttg 474

                                                                       
Query: 361 agattttgtagaaatttaattatgatgtaccctgtacttttgtaattggagcacattatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 agattttgtagaaatttaattatgatgtaccctgtacttttgtaattggagcacattatg 414

                                                                       
Query: 421 gtgattaaaggtaactgtattcctggcaagcctcttattgattgcattaactgcaaagat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gtgattaaaggtaactgtattcctggcaagcctcttattgattgcattaactgcaaagat 354

                                                                       
Query: 481 gctggaagtagaatccatttgattgatgagcgtgtaatctattcctatgctattttaggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gctggaagtagaatccatttgattgatgagcgtgtaatctattcctatgctattttaggt 294

                                                                       
Query: 541 actactctctaactctttttatttgaattccagttaaaaagtttccaacatatcttagct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 actactctctaactctttttatttgaattccagttaaaaagtttccaacatatcttagct 234

                                            
Query: 601 ccttctccaagttagaaaaaagaaaaaggaaac 633
           |||||||||||||||||||||||||||||||||
Sbjct: 233 ccttctccaagttagaaaaaagaaaaaggaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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