Query= MSMg01no111_l07.b1 MSMg01no111_l07.b1 CHROMAT_FILE:
MSMg01no111_l07.b1 PHD_FILE: MSMg01no111_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:22 2005
(480 letters)
>mm_chr2_128000350_128001227
Length = 878
Score = 882 bits (456), Expect = 0.0
Identities = 474/480 (98%), Gaps = 2/480 (0%)
Strand = Plus / Minus
Query: 1 caatactcaacgaaggtctgtgccttttctgtctcagatgctgggtcaggacagcttcag 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 678 caatactcaacgaaggtctgtgccttttctgtctcagatgctggatcaggacagcttcag 619
Query: 61 tctgtcctggccctcttcctgagtgtctctcccattacaatgacaaaaggagctcgaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tctgtcctggccctcttcctgagtgtctctcccattacaatgacaaaaggagctcgaaca 559
Query: 121 ttcaggacacttgttgggccaggcttgctcccatcctggctacttttcaacagaaaactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttcaggacacttgttgggccaggcttgctcccatcctggctacttttcaacagaaaactg 499
Query: 181 tgttgggcttcaggagaagagcttgcagtcacagaacacacattaaggaaagctctcagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgttgggcttcaggagaagagcttgcagtcacagaacacacattaaggaaagctctcagc 439
Query: 241 gcttaggaacacggacaaagaactcttcactcttttaatgtggagttttatttgatgttt 300
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 438 gcttaggaacacggacaaagaactcttcactctttgaatgtggagtttcatttgatgttt 379
Query: 301 tcagaaagaaaacatttagcttactttattataaacctacagttcttcaaagtcagacaa 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 378 tcagaaagaaaacatttagcttacttta-tataaacctacagttcttcaaagtcagacaa 320
Query: 361 aacaacataaatttacacaaaacaagactgtgcttaggactgttgtcatttcctcccttg 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aacaacataaa-ttacacaaaacaagactgtgcttaggactgttgtcatttcctcccttg 261
Query: 421 gctctataacgttgacttgtggactttgaaagtagtattttgtggacagcgagagaaaca 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 260 gctctataacgttgacttgtggactttgaaagtagtattttgtggacagagagagaaaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 878
Length adjustment: 10
Effective length of query: 470
Effective length of database: 868
Effective search space: 407960
Effective search space used: 407960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_l07.g1 MSMg01no111_l07.g1 CHROMAT_FILE:
MSMg01no111_l07.g1 PHD_FILE: MSMg01no111_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:22 2005
(485 letters)
>mm_chr2_127875569_127876453
Length = 885
Score = 897 bits (464), Expect = 0.0
Identities = 479/484 (98%), Gaps = 1/484 (0%)
Strand = Plus / Plus
Query: 2 aatgtaccctttcctcttcaacttgctttctggtatggtgttttgtggcagcaatagaaa 61
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aatgtaccctttccgcttcaacttgctttctggtatggtgttttgtggcagcaatagaaa 261
Query: 62 ccctaagacagtgcctctactttagagggtacaggaaaccactgggaaagagtgatttaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ccctaagacagtgcctctactttagagggtacaggaaaccactgggaaagagtgatttaa 321
Query: 122 gaaagctcatgcaggttgacctctgccacacctcaaggccaagttgaaaggaaagagagt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaaagctcatgcaggttgacctctgccacacctcaaggccaagttgaaaggaaagagagt 381
Query: 182 atttttgcatcgatattcataagagaaattggcctgaagttctctatctttgttggatct 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atttttgcatcgatattcataagagaaattggcctgaagttctctatctttgttggatct 441
Query: 242 ttctgtggtttaggtatcagagtaattgtggcttcttttaatgagttgggtagagtacct 301
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 442 ttctgtggtttaggtatcagagtaattgtggcttcataaaatgagttgggtagagtacct 501
Query: 302 tctacttctattttgtgaaatagtttgtgcagaactggaattagatcttctttgaaggtc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tctacttctattttgtgaaatagtttgtgcagaactggaattagatcttctttgaaggtc 561
Query: 362 tgatagaactctgcactaaacccgtctggtcctgggctttttttggctgggagactatta 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgatagaactctgcactaaacccgtctggtcctgggctttttttggctgggagactatta 621
Query: 422 ataactgcttctatttcttttagggaatatgggactgtttagatcgttaacttgatcctg 481
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ataactgcttctatttcttt-agggaatatgggactgtttagatcgttaacttgatcctg 680
Query: 482 attc 485
||||
Sbjct: 681 attc 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
