BAC Information

Click to search

BAC

Clone NameMSMg01-112A16
Chromosome2 (Build37)
Map Location 146,360,355 - 146,360,816
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc24a3, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik
Downstream geneLOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112A16.T7 (MSMg01no112_a16.b1)MSMg01-112A16.TJ (MSMg01no112_a16.g1)
ACCAG324558AG324559
length729729
length of high quality
(start - end)
466 (46 - 511)425 (74 - 498)
definitionCHROMAT_FILE: MSMg01no112_a16.b1 PHD_FILE: MSMg01no112_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:05 2005CHROMAT_FILE: MSMg01no112_a16.g1 PHD_FILE: MSMg01no112_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGG
AATTCCACACTGCTACCCCCCTTACCCCATAAAACCCCCTAGCTTTCGAG
CCTCATGGCCGACATCCGTTATCTCCTGTGTGAGATGCATGTCGGTCCGG
AGCTCTGTCATTAAACGACCTCATGTAATTACAGCAAGATGGGTCCTCGT
GTTTCTTTGGGACTAGAGTAGGGGTCCCCGAAAGGGGGTCTTACACTTTC
AGACTCTTTCCCTCCTGTCTTCTTGATTCTGCTCCACAGGGGCTCCCACA
CTAGATAATATGCAGATAGTTGCACAGCAGTTGAACAGTACAGTGCAGGT
TTTAACTCAGGTCATCTTGAGATGCCTTTGTTAATTATTACTTTTCTAGA
AAAGAAACATGGAAGTTTTAATTCCTATTCAAGTCTCCTGCCTAGACTAT
TGGCAATTCTTACAAGAAAACCAATTCTTCCAACAACCAGGCCACCTTTG
AAGTATAAGCCAACAGCTTCAAACAATAAATAACAGCAAGCAGGTGTTCT
CTGTGTGTGTGTGTGTGTGTGTACTATAGATAAATGCCATCCAAAGGTCA
AAGGATTGGAGAAGGATGCGGAGTCTGCCCATAGAGCTGATATATAAACC
AAAGTTGTTAACTTCTCAGGTGGCTTCCAGTTTAAAACTGTCTGGTTTCT
TCTGCTGCTGCTTTAGGATAAAAACCTGG
CATGACAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGGCAGGAACTCAAGGCAGGAGCTGA
TACAGAGACCATGGAGGCATGCTGTTACTGGCTTGTCCCTCATAGCTTGG
TCAGTCATGAATCAAGAAAATGATCTATACACTTATCTACAGGCAATCAC
ATGGAGGCAATTTCTCAATTGAAGTTCCTTTTCCTAAACAATTCTAGCTT
TTTGTCAAGCTGAAAAGAAAAATAAGACAAAACAGGACAGGGCAGTCATT
ATTGACTTAATTTGCATTTCTCTTAAGATTGGCTTCATTTGAGCTTCTTC
CTCTCATGTTTGTTGGCCACTTGTATTTTTCCCCCTATGAACTGTGTGGA
ATCAGTTGCCCAAATGAAACCCAGGAAGGGCTTCTTCTCATTGAAAGCTT
GAAGCGACAGGGGTTGCCCATATCACTTGCATTAGGTAGACCTTAAAGGC
AGTCAGGATACTTGGGCTATTTTCTAGCACAACAAAGGGGATCTTTCTAT
TCTAGCGTACCTTGGCTGGAGGTTGTTGGTCAAAAGAAGCTGGAGAGATG
CTAACTAGCACCCCAGTACCCTATGCAGCTGTCTTGGAAAGCAAATTTGA
CTTTTCTTGTTTGGTCTCAGTTAGAATATTTGGAAACCACTGGTGAAGCT
TCTGTCATTTACCGATAAGTTCCACATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_a16.b1 MSMg01no112_a16.b1 CHROMAT_FILE:
MSMg01no112_a16.b1 PHD_FILE: MSMg01no112_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:05 2005
         (466 letters)



>mm_chr2_146360151_146361016
          Length = 866

 Score =  816 bits (422), Expect = 0.0
 Identities = 452/462 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacactgctaccccccttaccccataaaaccccctagctttcgagcctcatggc 64
           ||||||||||| ||||  ||||||||||||||||| |||||||||||||||||||  |||
Sbjct: 205 gaattccacaccgctaagccccttaccccataaaaacccctagctttcgagcctcggggc 264

                                                                       
Query: 65  cgacatccgttatctcctgtgtgagatgcatgtcggtccggagctctgtcattaaacgac 124
           || |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 265 cggcatccgttatctcctgtgtgagatgcatgttggtccggagctccgtcattaaacgac 324

                                                                       
Query: 125 ctcatgtaattacagcaagatgggtcctcgtgtttctttgggactagagtaggggtcccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcatgtaattacagcaagatgggtcctcgtgtttctttgggactagagtaggggtcccc 384

                                                                       
Query: 185 gaaagggggtcttacactttcagactctttccctcctgtcttcttgattctgctccacag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaagggggtcttacactttcagactctttccctcctgtcttcttgattctgctccacag 444

                                                                       
Query: 245 gggctcccacactagataatatgcagatagttgcacagcagttgaacagtacagtgcagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 gggctcccacactagataatatgcagatagttgcacagcagttgaacagtagagtgcagg 504

                                                                       
Query: 305 ttttaactcaggtcatcttgagatgcctttgttaattattacttttctagaaaagaaaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttaactcaggtcatcttgagatgcctttgttaattattacttttctagaaaagaaaca 564

                                                                       
Query: 365 tggaagttttaattcctattcaagtctcctgcctagactattggcaattcttacaagaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggaagttttaattcctattcaagtctcctgcctagactattggcaattcttacaagaaa 624

                                                     
Query: 425 accaattcttccaacaaccaggccacctttgaagtataagcc 466
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 accaattcttccaacaaccaggccacctttgaagtataagcc 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)