BAC Information

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BAC

Clone NameMSMg01-112O07
Chromosome2 (Build37)
Map Location 112,306,260 - 112,306,461
singlet/doubletsinglet
Overlap gene2900064A13Rik
Upstream geneOlfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik
Downstream geneChrm5, Aven, Ryr3, 4930563P21Rik, Fmn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112O07.T7 (MSMg01no112_o07.b1)MSMg01-112O07.TJ (MSMg01no112_o07.g1)
ACCAG325184AG325185
length727931
length of high quality
(start - end)
206 (23 - 228)---
definitionCHROMAT_FILE: MSMg01no112_o07.b1 PHD_FILE: MSMg01no112_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:10 2005CHROMAT_FILE: MSMg01no112_o07.g1 PHD_FILE: MSMg01no112_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGACTACTATATTCCAGAGGATCCGCGGAATTCATCTCATTTCCCAAATA
GCTAATTGACCAAGGAAACATAATACTGCATTTACACAAACTCTTAGAAG
ACTTTGTCTCAGGGAGTAGGATAAAGTTGAAAATCTCAGCCTCAGCTACA
GCTACAGAGCTGCAGTCAAACAGAACAAGCACCAGACCATGAGCCAAATG
ATAGGATGGGAAACTGAGGCAGGAAGATGGACAGGCCAAGGCCAGTTTGG
GTAACTTACTGAGATTCTATCTCAACCAGATCTAAAAACTGCTTAAGAAC
TAGTACTAGAAGCCGGGCGGTGTTGGCGCACGCCTTTAATCCCAGCACTT
GGGAGGCAGAGGCAGGAGGATTTCTGATTTAGAGTGTAGCCTGCTCCACT
AAGTGAGCCTCCATGACAGCCAGGGCCTACACATAGATACCCTGTCTCGA
AAAACCAAAACAAAAAAAGAGCACTCATAGACGTCACGAACCTTATGTAT
CTAACAGATATTTATAGAACCTCTTCCTCCTACAGTTTTTTACTTTATCC
TCCTTCCCATTTTCCCATGGCGTTTTTTTCCCACACTTGATTATTCAATT
TTCGCACACAATAGGCTTTCCCCGTATCTCTTAACCCCCGTATTTATTCC
TCCTGCTTCCTTATTTTCCTTATCCTCCTTACCCAATGTTATTTTTTTCA
CCCTTTTCCATCTCCCTTTCTCGCGCA
NCTTTTTTCCCNNNNNNNCCCCNNCCCNCCCNCNCCCCCNCCCCCCNNNC
CCCCAATAACAAGNCNNANCCTGCCCNCCGCCTGNTTTCTCAAATTTANG
NGACACTATAAAAGGATCCCCATAATTCTTGGGGAGATCTCCCAACTATC
TATATGNNCNNTGCTTCCTTCTTTATTTATTTGTCTTTTTTTTATGTTTT
TTCTTATTTGTTGTGGGGGACGGGGGTTGGGGGGGGGGGAGGCGGGTAGA
GGGGGGTGTGGAAGGACGGAGAAGGTCGGGGTTGAATGTGGGAGGGGGGG
AATCAAAACCTTTNAAAATTATAAAANCNNNCCCAAAAAAANNNNTNNNN
NAAATTTCTTTTTTTTTAAAAAAACAAATTTTTNCTNCACAANNTANNNC
CACAAAAAAACCCCCCAAAAATCTTTTTTTTAAAAAAAAAAATTTTNAAA
AAACACCCAAAAAAAACAATATATAATTTTCCCCCTAACAACCCCTCCCC
TCTTTTTAAAATTTTTCTTATTCCCTTTTTTCTTTCTCCTTTCTTCCTTT
TCCCCAAATAAATCCATATTCTATTTATTTTATTTATTATAAAAAATACC
ATTNNCCTNTCCTTTTAATCCCAATCCTATAAAAACATTAATCCCTCTCC
CCTCCCCTTACAAACTCCTCTTTTTTTCCCCCTTTATTATTTTTTATCCC
ACNACATTATACTTCATCTTACTCTTAATTACTTTCTTTTCTTNCCCTCA
CAAAACCTTCTATAATTTTATTTTATTCTTCCATATCTTTTATTAACTCC
TCACCCCCTCTTAATATCAACCCTCTCCTTAATCACTATACACAATCCCC
TTATATTCTATTTTTATCCACCATACTCCTCATACACATCACTTTTCCAC
AATTCTATATACAACATTCTTCTTTTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_o07.b1 MSMg01no112_o07.b1 CHROMAT_FILE:
MSMg01no112_o07.b1 PHD_FILE: MSMg01no112_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:10 2005
         (206 letters)



>mm_chr2_112306037_112306642
          Length = 606

 Score =  340 bits (176), Expect = 3e-98
 Identities = 195/206 (94%), Gaps = 9/206 (4%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcatctcatttccc-----aaatagctaattgaccaaggaaacataatactgcatt 60
           |||||||||||||    |     |||||||||||||||||||||||||||||||||||||
Sbjct: 425 gaattcatctcat----caatagaaatagctaattgaccaaggaaacataatactgcatt 370

                                                                       
Query: 61  tacacaaactcttagaagactttgtctcagggagtaggataaagttgaaaatctcagcct 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tacacaaactcttagaagaatttgtctcagggagtaggataaagttgaaaatctcagcct 310

                                                                       
Query: 121 cagctacagctacagagctgcagtcaaacagaacaagcaccagaccatgagccaaatgat 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 309 cagctacagctacagagctgcagttaaacagaacaagcaccagaccatgagccaaatgat 250

                                     
Query: 181 aggatgggaaactgaggcaggaagat 206
           ||||||||||||||||||||||||||
Sbjct: 249 aggatgggaaactgaggcaggaagat 224


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 606
Length adjustment: 8
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)