BAC Information

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BAC

Clone NameMSMg01-113B19
Chromosome2 (Build37)
Map Location 150,627,294 - 150,627,838
singlet/doubletsinglet
Overlap genePygb
Upstream geneC530025M09Rik, OTTMUSG00000015750, LOC279056, Zfp120, EG245174, 3300002I08Rik, LOC100043832, OTTMUSG00000015730, LOC668924, OTTMUSG00000015743, LOC545472, Cst7, 2310001A20Rik, Acss1, Vsx1, Entpd6, LOC100043605
Downstream geneAbhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113B19.T7 (MSMg01no113_b19.b1)MSMg01-113B19.TJ (MSMg01no113_b19.g1)
ACCAG325342AG325343
length705737
length of high quality
(start - end)
551 (40 - 590)297 (69 - 365)
definitionCHROMAT_FILE: MSMg01no113_b19.b1 PHD_FILE: MSMg01no113_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:27 2005CHROMAT_FILE: MSMg01no113_b19.g1 PHD_FILE: MSMg01no113_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACAATTTGCGGCGCTAAACGACTCCTATATTCAGAGATCCGCGGAATTC
TAATGGTCCGCACGCTGCAGAATACCATGGTGAACCTGGGCCTTCAGACT
GCATGCGACGAAGCCACTTATCAGGTGTGTTTAATCTGTCCCCTGAAGAG
TGACCACTGACATTAGGACACCTGTGCCCTGGAGTGTTTTACCCTGTCAG
GAAGGATCATGTCCCTTCCTCAAGGGGAGAACATAAGACTGTAAGGGATG
ATAATAAATGGAATTATTATGAGAAGACTGGTTTGAGTGGTGATGCTGTG
GTTTAGAAGTTTCTAGAAATGTACTCCCTTCTCCCAGTCCAGGGGTAGCT
TTTGAATATGTCATGATCTATTTGGTTTCCCTCTCTGATCTTCAGACATC
CTCCTGACCTCATTGTGCTGTGCAGGTGTAGAAGTGCCTCCTCTCATGGA
AGAAGCCAACTGTTCAGGCATTTTCTTTGCCTTAATTTTACACAGGTCGT
TTGTACCCTCAGCAGAGCTGTGCTTATCTCCCAGTCTCTCTTCACTCTCC
TCTCTCCTCTGGAACGCTGGTCTCAGATGGGGAAGTTCTGTAGTGAGACC
TTGCAACATGCGTACATGAAAGTCTTTTAGAGAGGGGTGCCCCTCCCATG
TTGCCGCAGCATCCCATCTGCTTTGTTCAGAGCTTAAGTATGAGGAGTTT
GGGGG
ACAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTGATCTCTTCTGACCTCTGTGGACACCAGG
CATGCACGCTGCCACATATATACATGCACGCAGAACATTCATACACACAA
AATTTAAAAATAAATCCTTAAAAAACAAGCATTATAAAACTACTGAACTA
CTGAATATTAGAATAGTCTCAAATACATTATACTGAGCAAAAGAGGCCAG
AAATAAAGACTGCATTCTACATGATTCCACATGGCCCTGTTCCATGACGT
GTCAGCTTCTAGCCAGCCGAATGAACCCAGATACATGGGGCGCGGGGGGG
GGGGGGGGGGTTCCATTTGTGTTGAGTATCCTTACTATTTCTTCGCTTTT
TTCCGTCCTGCCTCCGGTGTTAATGGTCCGCAGGCGTTTACCGCCCCACC
TGTCGATCTTCCGGCCGCCTCGTCCGTTTCCCACGCCGACGGGCGGGCAG
GCCCCACGCGCGGGCGGCGCTGTCGCGGGGCGCATTATGGTGCGTGCGTC
GTCGGGCTTGTGGGAGGGGCAGGGCGCCGGCTGGGTCCCAGGCGTGGAGG
GTCTTGAGCAGCCGCCCCAGTGTGCAGCCGCTTATGTGGGCTATGGTGGC
GTTCGCTGGGGGCCCGCAGGGGCTGCGACGACCGGACGCGGCGGCCTGGT
GTGTAAGGAGGCGGCGCCTTATTATGGGGCCACCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_b19.b1 MSMg01no113_b19.b1 CHROMAT_FILE:
MSMg01no113_b19.b1 PHD_FILE: MSMg01no113_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:27 2005
         (551 letters)



>mm_chr2_150627090_150628038
          Length = 949

 Score = 1013 bits (524), Expect = 0.0
 Identities = 541/548 (98%), Gaps = 4/548 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcta-atggtccgcacgctgcagaataccatggtgaacctgggccttcagactgc 63
           ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctacatgggccgcacgctgcagaataccatggtgaacctgggccttcagactgc 264

                                                                       
Query: 64  atgcgacgaagccacttatcaggtgtgtttaatctgtcccctgaagagtgaccactgaca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgcgacgaagccacttatcaggtgtgtttaatctgtcccctgaagagtgaccactgaca 324

                                                                       
Query: 124 ttaggacacctgtgccctggagtgttttaccctgtcaggaaggatcatgtcccttcctca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaggacacctgtgccctggagtgttttaccctgtcaggaaggatcatgtcccttcctca 384

                                                                       
Query: 184 aggggagaacataagactgtaagggatgataataaatggaattattatgagaagactggt 243
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 385 aggggagaacataagactgtaagggatgataataaatggaattat---gagaagactggt 441

                                                                       
Query: 244 ttgagtggtgatgctgtggtttagaagtttctagaaatgtactcccttctcccagtccag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttgagtggtgatgctgtggtttagaagtttctagaaatgtactcccttctcccagtccag 501

                                                                       
Query: 304 gggtagcttttgaatatgtcatgatctatttggtttccctctctgatcttcagacatcct 363
           |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 502 gggtaggttttgaatatgtcatgatctatttgatttccctctctgatcttcagacatcct 561

                                                                       
Query: 364 cctgacctcattgtgctgtgcaggtgtagaagtgcctcctctcatggaagaagccaactg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cctgacctcattgtgctgtgcaggtgtagaagtgcctcctctcatggaagaagccaactg 621

                                                                       
Query: 424 ttcaggcattttctttgccttaattttacacaggtcgtttgtaccctcagcagagctgtg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttcaggcattttctttgccttaattttacacaggtcgtttgtaccctcagcagagctgtg 681

                                                                       
Query: 484 cttatctcccagtctctcttcactctcctctctcctctggaacgctggtctcagatgggg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cttatctcccagtctctcttcactctcctctctcctctggaacgctggtctcagatgggg 741

                   
Query: 544 aagttctg 551
           ||||||||
Sbjct: 742 aagttctg 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 949
Length adjustment: 10
Effective length of query: 541
Effective length of database: 939
Effective search space:   507999
Effective search space used:   507999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)