BAC Information

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BAC

Clone NameMSMg01-113C22
Chromosome2 (Build37)
Map Location 9,797,401 - 9,797,570
singlet/doubletsinglet
Overlap geneGata3
Upstream geneLOC100040710, LOC100040548, LOC100040566, LOC100040768
Downstream gene4930412O13Rik, Taf3, Atp5c1, Kin, Itih2, Itih5, Sfmbt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113C22.T7 (MSMg01no113_c22.b1)MSMg01-113C22.TJ (MSMg01no113_c22.g1)
ACCAG325395AG325396
length747724
length of high quality
(start - end)
170 (139 - 308)244 (69 - 312)
definitionCHROMAT_FILE: MSMg01no113_c22.b1 PHD_FILE: MSMg01no113_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:32 2005CHROMAT_FILE: MSMg01no113_c22.g1 PHD_FILE: MSMg01no113_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CCATCTCTCCTGATCTCCCCCCCCTTCCTCTCGCTTAAGATTTTAGTTTC
CGCATTGTTCTTAATGGTTGACTAGAATGTCAAATGGTGAGGCGGATACT
GGATTGAAAGATCAATAAGGGTGTAGACTTGCGCTCGGAGTTTAAAGGTT
ACCCTACCAGAGAGTATGGGGCTTGGACAATTCATGACCGCCTTAACATT
GCGTATTTTAAGTGAAGGCTAAACACACTGTGTGTATGAGTCACCCTTCG
TTTGAAATAAACACATATACTGGAATTTTGCGTCTCAGGCGAAAATTCTC
AGAACGCCCCAGAGAACAGGACACCGAAGCCAAGGACTTCTTTTCTTTTC
CTATGAGTTGGACGCCTGAAGAATGAGAAGGGGGTGGGGTGCCGAGTTAT
CAATTCTCTACCTTAATCACATTTTCCCCCCCTCCACCTTTTCCCCCATT
ATGACCTTCCCCCTCTCCTGAATATTGTTATCCCCCCCCCCCCTATTTCT
ATTCTCCCCCCCTACTCTCTACTAATTCCTTCCAATAAAATCTCTTTTTA
TCCAACACAATTAATCCTTCCGTCTTCTCTACCTTCCCCCCTCTTATTTC
CGTTAGCCCTCTCCCACTCCATGTGTTTTTTAGCCTTAAACAATTCCCCC
TCCACCTCCTTCCTATCCTCTCTCGCTCTTGCCTCCTCTTCTTTCTC
AATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGAGGGCTGAAGTCTATTGGGAAGCATAGTG
GCAAGACACAGGACCAACAAGTTGAGAGATCATATCTTAGCTATGTGCAC
ATACAGGAAGTGGAGGGAGTGAACTCTTTGCCTTGTCCAGAGCCAGCAAT
GTTCTTTTTCCAGCAAAGTTCCACGTCCTACAGGTTCCTTGCCAACTGGG
GACCAAGTGTTCAAACACATGAGCCTATGGGTGACATTTTTCACTCAAGA
CAAAACATATGCCATCACAAATATTGCCCGTCACTAAAGGCTGATGGTAT
CCACGGATTTCAACAACATCGCGTTCTGCTCTGGAACTTTCCCTACAGAA
CGAAAGCTTACACCTGGCTCCAAGTCATGATGGTACATACCTCGTTACTT
TCCATCCTTGGAGACGAATGTCCCTCGTGTATCTAAAAGTTCACAGATTC
TTTCGTACCCAACCCTCATCAGAACTCTTTATCTCGACTATGGCAACTGA
CAGCGTGAAATTAATTTGTAACAAAGCATTTCATGTCCAATGCCCCGATT
TCTACTCACTCCTTAACTGATAATGCCGGTTCGCTTTTTCCGGGTCTCCA
ACACTTCCCATCTCTTACCTAATGCTGAAACCCCACAGCTTTGATATTAA
TTTCCGCAATTGTTTCCCTCCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_c22.b1 MSMg01no113_c22.b1 CHROMAT_FILE:
MSMg01no113_c22.b1 PHD_FILE: MSMg01no113_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:32 2005
         (170 letters)



>mm_chr2_9797201_9797770
          Length = 570

 Score =  298 bits (154), Expect = 1e-85
 Identities = 166/170 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaggcggatactggattgaaagatcaataagggtgtagacttgcgctcggagtttaaagg 60
           ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 370 gaggcggatactggattgaaagatcaataagggtgtagatttgcgctccgagtttaaagg 311

                                                                       
Query: 61  ttaccctaccagagagtatggggcttggacaattcatgaccgccttaacattgcgtattt 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 310 ttaccctaccagagagtatggggcttggacaactcatgaccgccttaacattgtgtattt 251

                                                             
Query: 121 taagtgaaggctaaacacactgtgtgtatgagtcacccttcgtttgaaat 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 taagtgaaggctaaacacactgtgtgtatgagtcacccttcgtttgaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)