Query= MSMg01no113_h19.b1 MSMg01no113_h19.b1 CHROMAT_FILE:
MSMg01no113_h19.b1 PHD_FILE: MSMg01no113_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:55 2005
(612 letters)
>mm_chr2_29334815_29335826
Length = 1012
Score = 1149 bits (594), Expect = 0.0
Identities = 605/610 (99%), Gaps = 4/610 (0%)
Strand = Plus / Minus
Query: 5 gaattcagacttttcttcattgtgaagtgtgtcatccttccccgccaatgccccgcccct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 gaattcagacttttcttcattgtgaagtgtgtcatccttccccgccaatgccccgcccct 753
Query: 65 tccctccaaccagtcaaatgctctaggactttctctaggtatagtacattatgctccagt 124
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 752 tccctccaaccagtcaaatgctctaggactttctctaggtatagtacaatatgctccagt 693
Query: 125 gggggacagttttcactctgtagaggtgacagcaacagcacaagcagctctctgcaatcg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gggggacagttttcactctgtagaggtgacagcaacagcacaagcagctctctgcaatcg 633
Query: 185 tgtgcttcttcttactaaaaaaagcactgtgtgcgggctttcagctgtagttacggtatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tgtgcttcttcttactaaaaaaagcactgtgtgcgggctttcagctgtagttacggtatg 573
Query: 245 gttttgtggcttcacgtgttcgtgggttctataccgtgcatatgaagaaacttgggcgtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gttttgtggcttcacgtgttcgtgggttctataccgtgcatatgaagaaacttgggcgtg 513
Query: 305 catagtcacctgtactatttcggataagacagcataagaataaaggaacagagtgtttaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 catagtcacctgtactatttcggataagacagcataagaataaaggaacagagtgtttaa 453
Query: 365 aagcaaaatgagtgattttgcttcccctactctatctccccatctctccttcccttatgg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aagcaaaatgagtgattttgcttcccctactctatctccccatctctccttcccttatgg 393
Query: 425 tggccggtgaggcacgttgaagcaaacctcatacatcgtgacatctctgatgtacatatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tggccggtgaggcacgttgaagcaaacctcatacatcgtgacatctctgatgtacatatt 333
Query: 485 tcagcatccacttctaaaaactatagcagagatgaggctctgaccatgcctagcaaagca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tcagcatccacttctaaaaactatagcagagatgaggctctgaccatgcctagcaaagca 273
Query: 545 ctaacatctgacagaagtctgtgtgtgtatcta--agaggactcaggcaaggtttgccct 602
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 272 ctaacatctgacagaagtc--tgtgtgtatctaagagaggactcaggcaaggtttgccct 215
Query: 603 ccccttgccc 612
||||||||||
Sbjct: 214 ccccttgccc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_h19.g1 MSMg01no113_h19.g1 CHROMAT_FILE:
MSMg01no113_h19.g1 PHD_FILE: MSMg01no113_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:56 2005
(592 letters)
>mm_chr2_29178860_29179851
Length = 992
Score = 1060 bits (548), Expect = 0.0
Identities = 581/592 (98%)
Strand = Plus / Plus
Query: 1 aggtgttcttggatcccgagagctgaagttataagccattgtgacccacctgacatggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtgttcttggatcccgagagctgaagttataagccattgtgacccacctgacatggtt 260
Query: 61 actgggaactgaactctggtcctctgcaagagcagcaaggcattcttaaaactctgagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgggaactgaactctggtcctctgcaagagcagcaaggcattcttaaaactctgagcc 320
Query: 121 atcttcccagccttcgcctcccatcaattctttattagattactgtgaagttgctcttgc 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 atcttcccagccttcgcctcccatctattctttattagattactgtgaagttgctcttgc 380
Query: 181 atcagcggctgtgggtgtgtattagttactttgctcttgctgtggtgaaataccatgacc 240
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 atcagcagctgtgggtgtgtattagttactttgctcttgctgtggtgaaacaccatgacc 440
Query: 241 aaggcaacttatcgtctataagttccaaattaatgtatttttttcttgtaacaaggtctc 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggcaacttattgtctataagttccaaattaatgtatttttttcttgtaacaaggtctc 500
Query: 301 acccaagctggccttgaacttgatatcctcttgcatctgccttccaagaactcagattac 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acccaagctggccttgaacttaatatcctcttgcatctgccttccaagaactcagattac 560
Query: 361 agactcaaacgtgcaccggttgatacctccacagctgcctggacatcttctctatgcctg 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 agactcaaacgtgcaccggttgatacctccacagctgcctggagatcttctctatgcctg 620
Query: 421 ctgaatgacaccggacccgttagcactgaagatcattgaataacctgagttcctcatctc 480
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgaatgacactggacccattagcactgaagatcattgaataacctgagttcctcatctc 680
Query: 481 cttgaaccttactcgagtgctagccagcactccactacgctagaaagcacaggttcccat 540
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 cttgaaccttactcgagcgctagccagcattccactacgctagaaagcacaggttcccat 740
Query: 541 caaaagggcttatttgcgcacatagttccaaaaatttagagtcggtgatgca 592
||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 741 caaaagggcttatttgcgcacatggttccaaaaatttagagtcggtgatgca 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
