BAC Information

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BAC

Clone NameMSMg01-113N23
Chromosome2 (Build37)
Map Location 146,078,703 - 146,078,848
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1
Downstream geneA230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113N23.T7 (MSMg01no113_n23.b1)MSMg01-113N23.TJ (MSMg01no113_n23.g1)
ACCAG325898AG325899
length715708
length of high quality
(start - end)
---146 (262 - 407)
definitionCHROMAT_FILE: MSMg01no113_n23.b1 PHD_FILE: MSMg01no113_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:26 2005CHROMAT_FILE: MSMg01no113_n23.g1 PHD_FILE: MSMg01no113_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTATGCTTCTCTCTTTTCCCTCAGACTTCAGAAGACCTCATGCACTCAC
TCATTTGACAGAACTGAAAGCCTGAACTGAATGTGGCATGCCTGTTTTAA
TAAAATCTGCTGCAGGACGAGCATGACGAAGGATGCTTATATAAGGTAAA
CACTATGTCTGGACCAGCTGTATGCTTCGTTGCACACTCCCAGCTTACTT
GGATGGAGACCCGAAGATCCTGAGTGAAGAAAATGCCCCTGAGTGTCTGG
AGAACACACTGCAGGTCAATTTCTCAGAACACAGTATCGCCTGGGGATAA
TCTCAGAAAGTAGGTCCCTGACAGATGATCTAATTAACCCTCTCTAGTGT
GCTTGATGACTTGAACCTGATATGTGTGTCTCCCGACTCTCCCTACCCCT
GCCTGACATTAACAATCGCGGTGGCTGCTCCACTCCCGCTGCAAGTGACT
AAACTTGCCCCCCTGCAGGACATAGGGATGACACCACAAATAATGGAAGG
GTTCGCAGGACCATACGCTCTAGTCCCTTCTTAAGCGTCCCAAAACCCAG
TAGTTCTGTGTCAAAACGCCACCTAGTGACTTAACTCCATTCCACCAATC
CAGGATCCATTCTCCTGTCCTGAAAATTACGCCTCTTCATGGAGTTCTAT
GTCAACGTTTCCCCC
ATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTGTGATATAAAAACAGTCTCACGCACTATGC
AAGATAAAGAATAACCAATATCCTGTTTGTTTGTTTTTTTCACCACTTAA
AAAAGTACAATGATAAAATCCCAGATGAACTTCACCTACCTGTGTTCCCC
CAATCTGCTAGACTTCACAATGATGTATTGAAGATCTGGCCAGCTTAGAA
TCCTGGTGGTACCCACACCTCTCCTGCAGCTCAATCAGACCACAGGACAG
CAGCTTCATTCCTCACATCTCACGGACCTACAGGGCAGGGTTTTAGACGG
TCGCTCCACCCTCAGAAGAGTATCCTAGGACTTAATAGGAGAGGCATAGA
AGTGGGCGAACCACAAAGGAGCCCTGCCTTCCTTGAAGCTACGTCCCAGG
CAGGAGACAAGGAATCAGCCATCACGAGCTCCTTGCTGCTAGGCAAGAAA
ACACAGTGAAGGATGAGTCTGAGTGACCCGAGGAACAGCAAGTGGTTCTT
TAAGTGAGTCCTGTCTCACTCAAGAAGCCTCATGTGAAGGTACAAGCCTG
CAAACCCAGCTCCATGAAATACTGAGATGAGAGGATTCCGTGAGCACCAG
GGCTATAAACTTTCTGACCCGGACCAGACTCCTTCTCGGGCCAACAAAGT
CCATAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_n23.g1 MSMg01no113_n23.g1 CHROMAT_FILE:
MSMg01no113_n23.g1 PHD_FILE: MSMg01no113_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:26 2005
         (146 letters)



>mm_chr2_146078503_146079048
          Length = 546

 Score =  259 bits (134), Expect = 5e-74
 Identities = 143/146 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccacacctctcctgcagctcaatcagaccacaggacagcagcttcattcctcacatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cccacacctctcctgcagctcaatcagaccacaggacagcagcttcattcctcacatctc 287

                                                                       
Query: 61  acggacctacagggcagggttttagacggtcgctccaccctcagaagagtatcctaggac 120
           ||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 286 acaaacctacagggcagggttttagacggtcactccaccctcagaagagtatcctaggac 227

                                     
Query: 121 ttaataggagaggcatagaagtgggc 146
           ||||||||||||||||||||||||||
Sbjct: 226 ttaataggagaggcatagaagtgggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 546
Length adjustment: 8
Effective length of query: 138
Effective length of database: 538
Effective search space:    74244
Effective search space used:    74244
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)