BAC Information

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BAC

Clone NameMSMg01-114B18
Chromosome2 (Build37)
Map Location 129,145,528 - 129,146,027
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a
Downstream geneIl1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114B18.T7 (MSMg01no114_b18.b1)MSMg01-114B18.TJ (MSMg01no114_b18.g1)
ACCAG326074AG326075
length759741
length of high quality
(start - end)
321 (46 - 366)500 (75 - 574)
definitionCHROMAT_FILE: MSMg01no114_b18.b1 PHD_FILE: MSMg01no114_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:43 2005CHROMAT_FILE: MSMg01no114_b18.g1 PHD_FILE: MSMg01no114_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGATTATCTCTGTACCCCATTTTTAATTGGGCTATTTGGGTTG
TTGGTGTCTAACTTCTTGAGTTCTTTGTGTATTTTGGATATTAGCCCTCT
GTTGGATGTAGGGTTGGTGATTTTTTTCCCTATCTGTAGGCTGTTGTTTT
GCCCTAATGACAGTGTCCTTTGACTTACAGAAACTTTTCAGTTCTGTAAT
AAATGAGGTCCCATTTATTACTTCTTGACCTTAGTGCATGAGTTATTGGT
GTTCTGCTCAGGAAGTTGTCTCCTGTACCAAGGAGTTCAAGGCTATTCCC
CACTTTCTTTTCTATTAGACTAAGACTGTCTGATTTTACATTGACGTTTT
TGATCCATTTGGACTTGCACCTCGTGTACGGTGATAAATACCCATCTATT
TCCATTCCTCTACCTGCCGACATCCTGCTAGACCCATCCCCCTTGCTGAA
CATGCTTTCTCTTTTCCCTTGTCCAGCTCCTGTTTTCTTCGTCACATTTC
TGTGCCCCCTCCGCGTTCACGCCCATTTCCTCTGTTTTCCCCTCGTATCC
CCCCCCTTGCCCTTTCCCTCCTCCTCCCCTTTTTTCTCCTCCCCTTTGTC
CTCCCTCTATTTCCTCTCCCTCTCCTCCCCCTCTCTTCTTCCTATGTCCC
CTTTCTTCCCGCCCCTACTCTTCTCTTTTTCTCTTCCCTCCCCTTTTTCT
TCTTCCCCT
ATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATCCCCAGAATTACATAAAAATTGGC
CTTTCATAGCTCTTGATGGTTTATAATTGAGTGTTTTATGTTTAAGTCTT
TCATTTATTTGGGATTTAGGCATGACTTGAAATTCTATAAGTTTGGCATT
GAAACGTAGCCTGCTGTCTCTTAGACAGCCTTTGAGGAAATCAGGGACCA
GGGAGTCAGAAGTTTCTATTTCCCTCCTTAGAGGGATGTGAATGTCACTT
CCCCTCTTTCTATTTTGTTTCTTCGAATTCTTTCTTTCCATACTGCAAGA
CCCGCTAGTTCAGTTCTCTAGAAATTCCCACGGGCTGAAGGCAAAGCAGA
ACTAGATGGTGGGCAAATCTGGGTAATGCTTCTGTATTCATGAAGCTTAC
CCTACACAGTGACTCAAATTGCCCAGAGAGATCATCCGTTTCTTCTAGAC
TTCTCCATTTTTCTAGTCCAGACTCCAGTCATCACAGAATCCCCTTCTAC
TCTCCTGCACCCCCAGGCGACCTCGAGTCAGTCCTCACTTCCTTCTGCCT
GTCCATTCCTTCCATCCCCTGGCCGCCACCATCAGACTGATCACCGATTT
CCTTCACCCACTCTTTCCTCACCATACTCCTGGAGGATGAGTCACTTCTG
GTGGCCCACCTGCCATGTTTGCCACTCTCAGAATCTCTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_b18.g1 MSMg01no114_b18.g1 CHROMAT_FILE:
MSMg01no114_b18.g1 PHD_FILE: MSMg01no114_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:43 2005
         (500 letters)



>mm_chr2_129145328_129146227
          Length = 900

 Score =  959 bits (496), Expect = 0.0
 Identities = 499/500 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atccccagaattacataaaaattggcctttcatagctcttgatggtttataattgagtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atccccagaattacataaaaattggcctttcatagctcttgatggtttataattgagtgt 260

                                                                       
Query: 61  tttatgtttaagtctttcatttatttgggatttaggcatgacttgaaattctataagttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttatgtttaagtctttcatttatttgggatttaggcatgacttgaaattctataagttt 320

                                                                       
Query: 121 ggcattgaaacgtagcctgctgtctcttagacagcctttgaggaaatcagggaccaggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcattgaaacgtagcctgctgtctcttagacagcctttgaggaaatcagggaccaggga 380

                                                                       
Query: 181 gtcagaagtttctatttccctccttagagggatgtgaatgtcacttcccctctttctatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcagaagtttctatttccctccttagagggatgtgaatgtcacttcccctctttctatt 440

                                                                       
Query: 241 ttgtttcttcgaattctttctttccatactgcaagacccgctagttcagttctctagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtttcttcgaattctttctttccatactgcaagacccgctagttcagttctctagaaa 500

                                                                       
Query: 301 ttcccacgggctgaaggcaaagcagaactagatggtgggcaaatctgggtaatgcttctg 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 ttcccacgggctgaaggcaaagcagaactagatggtggggaaatctgggtaatgcttctg 560

                                                                       
Query: 361 tattcatgaagcttaccctacacagtgactcaaattgcccagagagatcatccgtttctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattcatgaagcttaccctacacagtgactcaaattgcccagagagatcatccgtttctt 620

                                                                       
Query: 421 ctagacttctccatttttctagtccagactccagtcatcacagaatccccttctactctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctagacttctccatttttctagtccagactccagtcatcacagaatccccttctactctc 680

                               
Query: 481 ctgcacccccaggcgacctc 500
           ||||||||||||||||||||
Sbjct: 681 ctgcacccccaggcgacctc 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)