BAC Information

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BAC

Clone NameMSMg01-114C08
Chromosome2 (Build37)
Map Location 53,394,472 - 53,579,330
singlet/doubletdoublet
Overlap geneLOC666876, LOC207933
Upstream geneCacnb4, OTTMUSG00000012638, Stam2, Fmnl2, Prpf40a, Arl6ip6, LOC666872
Downstream geneRprm, LOC666913, LOC626563, LOC100041792, LOC100042878, Galnt13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114C08.T7 (MSMg01no114_c08.b1)MSMg01-114C08.TJ (MSMg01no114_c08.g1)
ACCAG326100AG326101
length724714
length of high quality
(start - end)
182 (86 - 267)106 (160 - 265)
definitionCHROMAT_FILE: MSMg01no114_c08.b1 PHD_FILE: MSMg01no114_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:46 2005CHROMAT_FILE: MSMg01no114_c08.g1 PHD_FILE: MSMg01no114_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,579,149 - 53,579,330)(53,394,472 - 53,394,575)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGTTTATTATCTTTCACTCATGGGAAATCACATGGATAAAATACTCAGT
AAGTACAGTGATATCAATGAAGGGAACAAATAAAGCAACATCGTGTTTGG
GCAAATCTGTTCTTTTTCTGTGCACCATAGAACACATCTAGGGTAAAAGA
GGTAGAGCATAAACCAGAGGTAGCACATGTGTGTAGGTCAGCAGAACTAA
ACAAAATCAAAGAGGAACGCAGCAGAATCTACTGACATCATCAGTAAAAA
TTGCTAGAGTATCTAGCAGGTACATGGTTCCAGCAGCTGTTTGAATGCTA
TTTACCTTAGTCTGTCTGCTAACCTAGTCTTTGTTGTCATGCAAGGACTT
TGCTTCTGATTTACATGACCTTTTTTTTTCTCTGCTCACAGTCTCCACTT
CCCATCTCTTCTTGAAATCTTGAAAGGGAAATGTCTGGGGTCAGTCTGAA
TAACCCAATGACTAAAAATATATTTCCTTTTACTTCCGTAAAACCCGTTA
ACATGCACCGAGCGTGATTTTTAGTGACACAGCTGCCTTCGTGCCACTTA
TCTCCGCTCCTTTGCAACCCCCCTGCTCTTATACTCGTATCCCTCACCCC
TTATAAAAGACCCCTGATTCCTCTAAGTTGTCACTTTGGACCCTTCATGG
TCTTTCTATTAAGCCCCGCCCCTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAAGGCTAGGTGACACATCTGTGTTTTAAAAGACCCCTGGCAAATG
CAAAATTAAAATACTTATGGATGGCTCTAAGAGAAACCAAATTCCTGCTT
GGGAAGCATGCCAAAGGCTCAAGGAATTATTAAGCCAAAAGTAAACAGTT
TGGACTTCATGAAAACTAAAATGTTGTGCACAGAAAGAATGTACTAAAAG
AGTGAAAAGACAGATCTAAGAATGAGGAAAATGTTTCAAATTGCTGTGTT
CAGCAGAGTTTGTCATGGAAGCCTGACCGGGGTGATGAAGAAAGGAGAGA
TGCAAGGAAAGACACAGAAAAGCTAGCATGTGTTAGGTCATGCTCACTCC
CACGGAGTGGCCCCACCTACCATGCTACAGCCTAGATCCTCAGATGGCCT
CATACACAGTGCGCGCCACCATTAGTCGGTCTTGCTACGAACACACTTCA
GCTGTTACTTTTTGCACAAACTGCCCAATGGCTGCCCTTGTTCCCCACCC
ACGACTTTGCCCCTTCCCATGGCTAGGCATTGTTCCCAGTCCACACACAC
CATTCACTTTGGCACCTATCACCCCCTTACACTCCCCCTTCAAGGTTTCT
TTCGCTCCCCTTAGCACTCACCTGTGCCGCCCAAGGTCTCTCATATCTTT
TTATCTCCCCGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_c08.b1 MSMg01no114_c08.b1 CHROMAT_FILE:
MSMg01no114_c08.b1 PHD_FILE: MSMg01no114_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:46 2005
         (182 letters)



>mm_chr2_53578949_53579530
          Length = 582

 Score =  344 bits (178), Expect = 2e-99
 Identities = 181/182 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gataaaatactcagtaagtacagtgatatcaatgaagggaacaaataaagcaacatcgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gataaaatactcagtaagtacagtgatatcaatgaagggaacaaataaagcaacatcgtg 323

                                                                       
Query: 61  tttgggcaaatctgttctttttctgtgcaccatagaacacatctagggtaaaagaggtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tttgggcaaatctgttctttttctgtgcaccatagaacacatctagggtaaaagaggtag 263

                                                                       
Query: 121 agcataaaccagaggtagcacatgtgtgtaggtcagcagaactaaacaaaatcaaagagg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 262 agcataaaccagaggtagcacatgtgtgtaggtcagcagaactaaacaaagtcaaagagg 203

             
Query: 181 aa 182
           ||
Sbjct: 202 aa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space:    99876
Effective search space used:    99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no114_c08.g1 MSMg01no114_c08.g1 CHROMAT_FILE:
MSMg01no114_c08.g1 PHD_FILE: MSMg01no114_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:46 2005
         (106 letters)



>mm_chr2_53394272_53394777
          Length = 506

 Score =  201 bits (104), Expect = 9e-57
 Identities = 104/104 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccaaaggctcaaggaattattaagccaaaagtaaacagtttggacttcatgaaaactaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccaaaggctcaaggaattattaagccaaaagtaaacagtttggacttcatgaaaactaa 260

                                                       
Query: 61  aatgttgtgcacagaaagaatgtactaaaagagtgaaaagacag 104
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgttgtgcacagaaagaatgtactaaaagagtgaaaagacag 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 506
Length adjustment: 8
Effective length of query: 98
Effective length of database: 498
Effective search space:    48804
Effective search space used:    48804
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)