BAC Information

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BAC

Clone NameMSMg01-114N14
Chromosome2 (Build37)
Map Location 152,909,144 - 152,909,714
singlet/doubletsinglet
Overlap genenone
Upstream geneScrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535
Downstream geneHck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114N14.T7 (MSMg01no114_n14.b1)MSMg01-114N14.TJ (MSMg01no114_n14.g1)
ACCAG326630AG326631
length717736
length of high quality
(start - end)
320 (34 - 353)571 (72 - 642)
definitionCHROMAT_FILE: MSMg01no114_n14.b1 PHD_FILE: MSMg01no114_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:38 2005CHROMAT_FILE: MSMg01no114_n14.g1 PHD_FILE: MSMg01no114_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTTTA
TGTGATCCGGCTGGCCTTAAACTCACAGAAATCCACCTGCCTCTGGCTTC
TAGTGCTGAGATTAAAGTTGTATGCAAGCACATTTGGCTATCATCAATAT
GGCAGCCATTCATCCATTCCAGAAACACTGCAAGGCTGAAATGTGCCAGG
TACTGTGCTAGATGTTATAATATAAAATCAGAAGGATAAGGTTTCTGTCC
TCAAGGCATTTCATTCTAATTCAGGTTAGGACACACTAAACATGAAAACA
AATTCATTATGGTATATTTTGATGATTGCAAGGGAAAAAATGAAAAGGTT
TGGTGACACGCAGACTCAGGAAATGACAAGCAGAGAGCTCAACGGAGTCC
TCTTTGGTGACACGTATGTTGAGACTTCAAGGATGACAAAGAGTTACCAG
AAATTATAGGAAGGTACTCCGAGAAGAATATCTCATAGACCTTTATGCCT
GTAACCAATATAAACCCCCTTACTGTGGTTGTACCTAGAGGGCCCTGGCA
GAAGGCTCGTGTACACCACTGTACCCACACTTGCCAGGCCCGCGTCATCA
CATGATGTCCATGGTCAGGAATGCAAGCTACTCCTGGATTGAGAGAACCC
ATGGATCTCATAACGCTGATCCCCCACTGCACTTCATTTGCCTCTCCCCC
CTGGTTTTTACACACCC
ATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGTGAGCCCGCTCCTAAGTACTTCCCC
GCCTAACCCTGGAATCTGGAGCCTTCTCCTGTGCGCAGTGGACCTGGGGC
TTCCCCTGCTGGCTACAAACTGCTCCTTTGGACTGTTTGTTCATTTCCAT
GGGGTTTTCCGGGTTTCTCTACATTCGCTTGCAAGAATAGTAATCACATT
TTAGATACGACTCCCTTGTTTGGTGTTGGTGTTCCACATACCTTCTCCCA
ATATGTTGCCCATCTGTTAAGCTTCTAGCATCGATTGACTAACTTCAATG
TGCGTACGCTGGAGTTTCCGTGAAGGCTTGCTAGAAGAGACGGTTGAGCC
ACGTACCCAGAGTTCCTGACTTGGGAGGGTAGAGGATTCGGCTGGAAGTT
TACTCTGCCAACACGAAGAGCGACAAGCATTAGCACTGCTAGCGATCGGG
GAACTCATGTGGAGAACAGCTAGCCCCTGGTGCTTCTATTGAACAAATTT
GCTCATTCTACTGAGCTCACTCATTACTTTTGATGTTATCAGGTGTCTTT
CCTCAGCTTGTGAGTGAGTGGCCTGGCTCTCAGGAAGCAGAAGTCAGGAA
GCCATGTTGCACAGTGATCTGCCATGTGAACTTACCAGAGTTCTTTTTTT
CAGCCTCCGTCCTGCCTTGCCCTGCTAGAAGGGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_n14.g1 MSMg01no114_n14.g1 CHROMAT_FILE:
MSMg01no114_n14.g1 PHD_FILE: MSMg01no114_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:39 2005
         (571 letters)



>mm_chr2_152908944_152909914
          Length = 971

 Score = 1042 bits (539), Expect = 0.0
 Identities = 563/571 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtgagcccgctcctaagtacttccccgcctaaccctggaatctggagccttctcctg 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 201 caggtgagcccgctcctaagtacttccccacctaaccctggaatctggagcctcctcctg 260

                                                                       
Query: 61  tgcgcagtggacctggggcttcccctgctggctacaaactgctcctttggactgtttgtt 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcgcagtggacctggggcttcccctgctggctacaaactgctcctttggactgtttgtt 320

                                                                       
Query: 121 catttccatggggttttccgggtttctctacattcgcttgcaagaatagtaatcacattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catttccatggggttttccgggtttctctacattcgcttgcaagaatagtaatcacattt 380

                                                                       
Query: 181 tagatacgactcccttgtttggtgttggtgttccacataccttctcccaatatgttgccc 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 tagatacgactcccttgtttggtgttgctgttccacataccttctcccaatatgttgccc 440

                                                                       
Query: 241 atctgttaagcttctagcatcgattgactaacttcaatgtgcgtacgctggagtttccgt 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 atctgttaagcttctagcatcgattgactaacttcaacgtgcgtacgctggagtttccgt 500

                                                                       
Query: 301 gaaggcttgctagaagagacggttgagccacgtacccagagttcctgacttgggagggta 360
           ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 gaaggcttgctagaagagatggttgagccacatacccagagttcctgacttgggagggta 560

                                                                       
Query: 361 gaggattcggctggaagtttactctgccaacacgaagagcgacaagcattagcactgcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaggattcggctggaagtttactctgccaacacgaagagcgacaagcattagcactgcta 620

                                                                       
Query: 421 gcgatcggggaactcatgtggagaacagctagcccctggtgcttctattgaacaaatttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcgatcggggaactcatgtggagaacagctagcccctggtgcttctattgaacaaatttg 680

                                                                       
Query: 481 ctcattctactgagctcactcattacttttgatgttatcaggtgtctttcctcagcttgt 540
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcattttactgagctcactcattacttttgatgttatcaggtgtctttcctcagcttgt 740

                                          
Query: 541 gagtgagtggcctggctctcaggaagcagaa 571
           |||||||||||||||||||||||||||||||
Sbjct: 741 gagtgagtggcctggctctcaggaagcagaa 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)