Query= MSMg01no114_n21.b1 MSMg01no114_n21.b1 CHROMAT_FILE:
MSMg01no114_n21.b1 PHD_FILE: MSMg01no114_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:40 2005
(484 letters)
>mm_chr2_53699377_53700260
Length = 884
Score = 857 bits (443), Expect = 0.0
Identities = 473/483 (97%), Gaps = 2/483 (0%)
Strand = Plus / Minus
Query: 1 aaacttcattattcacatttccctctggcaaatttcattctcaaaaattcccttgatgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aaacttcattattcacatttccctctggcaaatttcattctcaaaaattcccttgatgaa 623
Query: 61 cttttcaaactttcccactttgtttaactacataatccaacattttcaaatttatgtcag 120
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 622 cttttcaaactttcccactttattcaactacataatccaacattttcaaatttatgtcag 563
Query: 121 aaaatgtcatgacctacttcaaaaagaaaacagaaacgatctgtcaagtcaggcttgaat 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 562 aaaatgtcatgacctacttcaaaaagaaaacagaaatgatctgtcaagtcaggcttgaat 503
Query: 181 ttctctaatatttcctaacctg-aggtgggaaaaaaaggtctgtccatattattccctct 239
|||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||
Sbjct: 502 ttctctaatatttcctaacctgaagg-ggaaaaaaaaggtctgtccatattattccctct 444
Query: 240 cttgaaggaggattagatagtcatggctatggctatcctcacttctgtttcagaattctt 299
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 443 cttgaaggaggattagatagtcatggctatggctctcctcacttctgtttcagaattctt 384
Query: 300 cactgcttcacaccaagacacctctttttaatcacattttaattatttcaatatgttgtt 359
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 383 cactgcttcacaccaagacacctctttttgatcacattttaattatttcaatatgttgtt 324
Query: 360 acaattaattaactagtgcttatacattgttgtgacctgaaactacaattccttcaaatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acaattaattaactagtgcttatacattgttgtgacctgaaactacaattccttcaaatt 264
Query: 420 gtctcagtttatacacttaccctccttttctggtgtcagcgtaactatttatgatgctac 479
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 263 gtctcagtttatacacttaccctccttttctggtgtcagggtagctatttatgatgctac 204
Query: 480 atg 482
|||
Sbjct: 203 atg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no114_n21.g1 MSMg01no114_n21.g1 CHROMAT_FILE:
MSMg01no114_n21.g1 PHD_FILE: MSMg01no114_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:40 2005
(510 letters)
>mm_chr2_53534942_53535850
Length = 909
Score = 971 bits (502), Expect = 0.0
Identities = 508/510 (99%), Gaps = 1/510 (0%)
Strand = Plus / Plus
Query: 1 tacctcttgttcagaatgcagctagaagactgacttctacatggctaggatgagggtctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacctcttgttcagaatgcagctagaagactgacttctacatggctaggatgagggtctc 260
Query: 61 aaagcctacccccacagtgatatacttcctccaataaggccacacctcctaataatgcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagcctacccccacagtgatatacttcctccaataaggccacacctcctaataatgcca 320
Query: 121 ctccctgggtcaagcatattcaaaccaccactgggaattcttgagaaaactttcaagcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccctgggtcaagcatattcaaaccaccactgggaattcttgagaaaactttcaagcta 380
Query: 181 gaaaacaagttacacagaatcatgaaattaggggaatggaaattcagtttttccatttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaacaagttacacagaatcatgaaattaggggaatggaaattcagtttttccatttag 440
Query: 241 aattcttgcagctgatcccatccatcccgagtggtgtatccacttgaatgtcttattagt 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 aattcttgcagctgatcccatccatcccgagtggtgtatccacctgaatgtcttattagt 500
Query: 301 tctgttgcagttgagttaatgttgcattacctggagccagactctgcgttgcaattctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgttgcagttgagttaatgttgcattacctggagccagactctgcgttgcaattctct 560
Query: 361 gtgatttgttgagtgactgagggactcacaactctcatggaaggaatgctgaagtggctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgatttgttgagtgactgagggactcacaactctcatggaaggaatgctgaagtggctg 620
Query: 421 aaactatacacccactagagtctaagaaaggaatcaggaactaaaatggagtgaatctaa 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaactatacacc-actagagtctaagaaaggaatcaggaactaaaatggagtgaatctaa 679
Query: 481 tctctgtagaaaacagctcagcaatgacta 510
||||||||||||||||||||||||||||||
Sbjct: 680 tctctgtagaaaacagctcagcaatgacta 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 909
Length adjustment: 10
Effective length of query: 500
Effective length of database: 899
Effective search space: 449500
Effective search space used: 449500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
