Query= MSMg01no115_b24.b1 MSMg01no115_b24.b1 CHROMAT_FILE:
MSMg01no115_b24.b1 PHD_FILE: MSMg01no115_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:59 2005
(569 letters)
>mm_chr2_163074515_163075485
Length = 971
Score = 965 bits (499), Expect = 0.0
Identities = 553/577 (95%), Gaps = 15/577 (2%)
Strand = Plus / Minus
Query: 5 gaattcatgagaagtccttaactaccctgctctcctgttagggaaggtgaggttcaaagg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gaattcatgagaagtccttaactaccctgctctcctgttagggaaggtgaggttcaaagg 535
Query: 65 ataaataaggaggccacgttgacacatgacaccagtgttcccggagtgctttctgggtca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ataaataaggaggccacgttgacacatgacaccagtgttcccggagtgctttctgggtca 475
Query: 125 cacccacaactctgtggagggtatggagttcacaatca----gccacggaggtcacggtc 180
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 474 cacccacaactctgtggagggtatg--gttcacaatcagcatgccacggaggtcacggtc 417
Query: 181 ttgtgtggaggccaggcaccatctaagtcatcacaagtgtggcagatgaccgcagacagt 240
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ttgtgtggaggtcagccaccatctaagtcatcacaagtgtggcagatgaccgcagacagt 357
Query: 241 gaaaagagccagaaattaaaaccaactggtgccacgagagacaaccctagccccacatca 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 356 gaaaagagccagaaattaaaaccaactggtgccacgagagacaaccctagcccctcgtca 297
Query: 301 gaactggaagccacaaacagctgtctaaggaagtgaggggttggttttgacttcagagtg 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 296 gaactggaagccacaaacagctgtctaaggaagtgagaggttggttttgacttcagagtg 237
Query: 361 cagcctgctcccaagtccagtgtggtcttgga-----a--tg-actcaaagaggctcaga 412
||||||||||||||||||||||||| |||||| | || |||||||||||||||||
Sbjct: 236 cagcctgctcccaagtccagtgtggccttggacttggacttggactcaaagaggctcaga 177
Query: 413 gtaagctctgagcccttgggatgacaagctgaatctgcacaaccaagcattgtcactggg 472
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 176 gtaagctctgagcccttgggatgacaagctgaatctggacaaccaagcattgtcactggg 117
Query: 473 acacgcccaggccttggaatctcactcaccattcctgcaggctggcacatgatatagcaa 532
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 116 acacgcccaggccttggagtctcgctcaccattcctgcaggctggcacatgatatagcaa 57
Query: 533 cacaaaggcagcttctgcgacggcaggatatcgctca 569
||||||||||||| |||||||||||||||||||||||
Sbjct: 56 cacaaaggcagct-ctgcgacggcaggatatcgctca 21
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 971
Length adjustment: 10
Effective length of query: 559
Effective length of database: 961
Effective search space: 537199
Effective search space used: 537199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_b24.g1 MSMg01no115_b24.g1 CHROMAT_FILE:
MSMg01no115_b24.g1 PHD_FILE: MSMg01no115_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:59 2005
(540 letters)
>mm_chr2_162937235_162938171
Length = 937
Score = 986 bits (510), Expect = 0.0
Identities = 531/540 (98%), Gaps = 5/540 (0%)
Strand = Plus / Plus
Query: 1 caggccctgagccctgcaggcaggaaagggttaagagagaaatgtgcatttccactgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggccctgagccctgcaggcaggaaagggttaagagagaaatgtgcatttccactgaac 260
Query: 61 aagaaaatcaacttagaaaag-aatgtgtattggaaaatatctatttgcctgcaaaataa 119
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaaatcaacttagaaaagaaatgtgtattggaaaatatctatttgcctgcaaaataa 320
Query: 120 tgtaaaaataatgagctcctattcccctttgatgtgcagcgcacgcttttaaggaaagat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaaaaataatgagctcctattcccctttgatgtgcagcgcacgcttttaaggaaagat 380
Query: 180 tctgcatttctgagatactgggcctgccgagtaatgaagtggttgttatggcaacaactt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgcatttctgagatactgggcctgccgagtaatgaagtggttgttatggcaacaactt 440
Query: 240 tcaaaagcaagtatttttctgagagatgtgctccacacagccagcgtgagagagaaaaac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaaaagcaagtatttttctgagagatgtgctccacacagccagcgtgagagagaaaaac 500
Query: 300 atgaaaacagagacagggggacgagctaaacagaagctatcagctgcacagagcatctgc 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 501 atgaaaacagagacagggggacgagctaaacagaagctatcagctgcagagagcatccgc 560
Query: 360 tctggtcaaacgtgcccgcccgctccagctcccactaccctgcccttgcttgcagacctg 419
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctggtcaaacgtgcccgc----tccagctcccactaccctgcccttgcttgcagacctg 616
Query: 420 aagagaaagccatccctctacacccttccctgaaaatggctctagagtgactggggggag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 617 aagagaaagccatccctctacacccttccctgaaaatggctctagagtgactgggggtag 676
Query: 480 ggtgtcaccatcggtcctactgaagggtcctctccttccctgctggcccccaacctcagc 539
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 677 ggtgtcaccatcggtcctactgaagggtcctctccttccccgctggcccccaacctcagc 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 937
Length adjustment: 10
Effective length of query: 530
Effective length of database: 927
Effective search space: 491310
Effective search space used: 491310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
