BAC Information

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BAC

Clone NameMSMg01-115D10
Chromosome2 (Build37)
Map Location 56,067,076 - 56,067,467
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666936, Kcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115D10.T7 (MSMg01no115_d10.b1)MSMg01-115D10.TJ (MSMg01no115_d10.g1)
ACCAG326900AG326901
length744717
length of high quality
(start - end)
---412 (79 - 490)
definitionCHROMAT_FILE: MSMg01no115_d10.b1 PHD_FILE: MSMg01no115_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:06 2005CHROMAT_FILE: MSMg01no115_d10.g1 PHD_FILE: MSMg01no115_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGGTTTTCACTATTATTTCACCTCCTTAGTACGCCGTGAAAATA
ATGTTGTTCCGAAAATAGGCCAAATAATTGATTAAATTGATAAGATAGGG
GATGGTGAATTTTCGTGAGGAGACTTAGTAATAGTAAAGTGATTACTAGA
GTACACTATGTCACAAGAGTTGGATCCGATGATCGATTCACTAACGGGGA
CTGACGTTTTATATAGTAATCTCGCATTCTTATTGCCCACATGAGGGCTG
TTGTCCAATGACTGAAAATTTGTGAAAAATAATCAGAGAAGTCATTATTT
TATTTTTTATTTTCATGCCTGGCACTGTACTGATGTCTATAGTTGTCTTT
TATTTGTCTCTGGCCCTTACAAATTAATGTGCTGACGCGGCGGCGTGTAT
GCAACGCCGGTTATTTTTCTTAAAGCTTTTTCTTCAGAGGCACTGACCTT
CTCTTGCCTGTGAATACTCGCTATGCTACTTCACACCGCCAAACTGCTTC
CAGAATCACATGTCTAACAGGCACTCAAATCGCTTATAGAACCCCGAAGA
TGCTCATCTGTGCTGGGTACAAACCCAGCGTCCTGCCTTAATGGACGGTT
TATTATCCTCCATCTACTCTGGAAAACTCACAGTTTGCAATACACTTACA
GTGCATCGTTCCCTTCATTGCCCTCATGCGCCATGGTCCCCCTG
TCTTCTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGGATCCAGAAGAGAAAAT
AAAAACCATAGTAGCTTTTGATTATGGTTATGATCACAGCAACAGAAAAT
AACAAATATACATCCTTTAACAACTTCAACATCCTAAGTGTATTCTACCT
TCAATTGTGAGAAAATTCACAATATATTTTATCTTTTAGTTATATTTACT
TAGGGGAAGCTGGTAATCAGTTTATTTTTAATGTTTAAATATCATTTTAT
TTTAAGTTGGGCACCTTGCACATATATTAGAATAGATAGATTTTAAGGCC
AAATTTGAACAAATTTCCTTTAATAGGTGAATTAAAGTAAGTTAATTTAC
CATTGTGGTAGATATTTGTACTTTAGCTTTTATATGTGTCACATACCACA
TACAGACACAAACACACAGACACATTCCTGGATGCACGCACAAAGACAGG
TAAATTTAGGACTGATTTTCACTACTTTTTCTTCTCACTAATTACAGCTG
TTTAAATGTTTTCTTGTCAAAGCCTTCACACTTACACATTACATTTTATA
TTGCTAAATTTTTTCCCTATTTTTATTACATATTTTCCTCATTTACTTTT
CCAACGCTATACCCTATATCCCCTATGCCCCCCTCACTTTGCCTGTTTCC
TAAACTTACCCTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_d10.g1 MSMg01no115_d10.g1 CHROMAT_FILE:
MSMg01no115_d10.g1 PHD_FILE: MSMg01no115_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:06 2005
         (412 letters)



>mm_chr2_56067076_56067887
          Length = 812

 Score =  735 bits (380), Expect = 0.0
 Identities = 389/392 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctggatccagaagagaaaataaaaaccatagtagcttttgattatggttatgatcaca 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttctggatgcagaagagaaaataaaaaccatagtagcttttgattatggttatgatcaca 333

                                                                       
Query: 61  gcaacagaaaataacaaatatacatcctttaacaacttcaacatcctaagtgtattctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gcaacagaaaataacaaatatacatcctttaacaacttcaacatcctaagtgtattctac 273

                                                                       
Query: 121 cttcaattgtgagaaaattcacaatatattttatcttttagttatatttacttaggggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cttcaattgtgagaaaattcacaatatattttatcttttagttatatttacttaggggaa 213

                                                                       
Query: 181 gctggtaatcagtttatttttaatgtttaaatatcattttattttaagttgggcaccttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gctggtaatcagtttatttttaatgtttaaatatcattttattttaagttgggcaccttg 153

                                                                       
Query: 241 cacatatattagaatagatagattttaaggccaaatttgaacaaatttcctttaataggt 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 cacatagattagaatagatagattttaaggccaaatttgaacaaatttcctttaataggt 93

                                                                       
Query: 301 gaattaaagtaagttaatttaccattgtggtagatatttgtactttagcttttatatgtg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 92  gaattaaagtaagttaatttaccattgtggtagatatttgtactttagcttttatatgag 33

                                           
Query: 361 tcacataccacatacagacacaaacacacaga 392
           ||||||||||||||||||||||||||||||||
Sbjct: 32  tcacataccacatacagacacaaacacacaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)