Query= MSMg01no115_g24.b1 MSMg01no115_g24.b1 CHROMAT_FILE:
MSMg01no115_g24.b1 PHD_FILE: MSMg01no115_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:23 2005
(638 letters)
>mm_chr2_60641557_60642593
Length = 1037
Score = 1156 bits (598), Expect = 0.0
Identities = 613/618 (99%), Gaps = 1/618 (0%)
Strand = Plus / Plus
Query: 21 tcaactggtaacattttctctatttaataaaagaaagaataaggatccaaaaatgagata 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tcaactggtaacattttctctatttaataaaagaaagaataaggatccaaaaatgagata 280
Query: 81 caagatatgaaaaatttaaactaggcaatcaagttcaaacagatttcctagggctttatg 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 caagatatgaaaaatttaaactaggcaatcaagttcaaacagatttcctagggctttatg 340
Query: 141 tttcatgctgacagttttcatggtttccagaaaactggtctaggacatgaaaatattaag 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tttcatgctgacagttttcatggtttccagaaaactggtctaggacatgaaaatattaag 400
Query: 201 cacatataagggcatttcagtttccatttcatttgtttgagccacagctcagataaccgc 260
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 401 cacatataagggcatttcagtttccatttcatttgtttgagcca-agctcagataaccgc 459
Query: 261 cccatctgcttgcgccatttggctgcaaggggtggcactcacacagcacagtgccgtacc 320
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 cccatctgcttgtgccgtttggctgcaaggggtggcactcacacagcacagtgccgtacc 519
Query: 321 cagctagacaagaagccagagtttccggaaggcaagggaaccaacctcaggacctgaagg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 cagctagacaagaagccagagtttccggaaggcaagggaaccaacctcaggacctgaagg 579
Query: 381 tcacacacaactgaagccctggtgcggaaggccagcatcatgatcacaggaaaagacaag 440
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tcagatacaactgaagccctggtgcggaaggccagcatcatgatcacaggaaaagacaag 639
Query: 441 cgtagcacgaaggaagagatcaaatcaggaacgcaactcaccaatattcatagcatgccc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 cgtagcacgaaggaagagatcaaatcaggaacgcaactcaccaatattcatagcatgccc 699
Query: 501 ccgtgtgaccttcaccacacaagacctatgaaaaatgtataagatgccagatctactatg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ccgtgtgaccttcaccacacaagacctatgaaaaatgtataagatgccagatctactatg 759
Query: 561 aagggagcaatcctttgagggataggaggaatttccgtataaactcaccttagtactaaa 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 aagggagcaatcctttgagggataggaggaatttccgtataaactcaccttagtactaaa 819
Query: 621 taaaaatcctgtgtgcag 638
||||||||||||||||||
Sbjct: 820 taaaaatcctgtgtgcag 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1037
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1027
Effective search space: 644956
Effective search space used: 644956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_g24.g1 MSMg01no115_g24.g1 CHROMAT_FILE:
MSMg01no115_g24.g1 PHD_FILE: MSMg01no115_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:23 2005
(612 letters)
>mm_chr2_60738849_60739860
Length = 1012
Score = 961 bits (497), Expect = 0.0
Identities = 518/525 (98%), Gaps = 2/525 (0%)
Strand = Plus / Minus
Query: 1 cctatgggagctgaggcgaaggcttattggggaaagtgattgccttgcaggcttgagata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cctatgggagctgaggcgaaggcttattggggaaagtgattgccttgcaggcttgagata 465
Query: 61 ctaggctctcctattcaaaatagtactgctctgaagccctcccactgcacgctgacccag 120
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 464 ctaggctctcccattcaaaatagtactgctctgaagcccttccactgcacgctgacccag 405
Query: 121 ttaagcagctggacctccaggcatgtatgatcttaactttacacgccaagtagagcagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttaagcagctggacctccaggcatgtatgatcttaactttacacgccaagtagagcagtc 345
Query: 181 atcttctcgatttgtagtccagtcaagaggcaaaattaaagtttctaatacgatttgaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 atcttctcgatttgtagtccagtcaagaggcaaaattaaagtttctaatacgatttgaag 285
Query: 241 agtacttttactaagagattaataatttctaaagaaaacagaaatttcaaattactttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 agtacttttactaagagattaataatttctaaagaaaacagaaatttcaaattactttaa 225
Query: 301 ggtaaacatcctgtgtatatttatcgttgccgggaattgaacttacgcccttacacgtac 360
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 224 ggtaaacatcctgtgtatatttatcgttgccgggaattgaacttaggtccttacacgtac 165
Query: 361 aaggcaaatgctccactactgagctatatttccagttgcaaacatcatcttcatatttgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 aaggcaaatgctccactactgagctatatttccagttgcaaacatcatcttcatatttgc 105
Query: 421 ctttaaaatccctttcttt-ctggttactgcccacctttgcccttttagttgctcaggaa 479
||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 104 ctttaaaatcccttt-tttcccggttactgcccacctttgcccttttagttgctcaggaa 46
Query: 480 gttaaaaataaataaataaacaccaggaaagagtccttcattatt 524
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 gttaaaaataaataaataaacaccaggaaagagtccttcattatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
