Query= MSMg01no115_o09.b1 MSMg01no115_o09.b1 CHROMAT_FILE:
MSMg01no115_o09.b1 PHD_FILE: MSMg01no115_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:58 2005
(535 letters)
>mm_chr2_112118994_112119928
Length = 935
Score = 1009 bits (522), Expect = 0.0
Identities = 528/532 (99%), Gaps = 4/532 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtggaagtgaggagcaaaagagggtaaggaaggaatattatcaaaatatgttc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcagtggaagtgaggagcaaaagagggtaaggaaggaatattatcaaaatatgttc 260
Query: 65 tatacatttataaaagtgt----gtaaatgaaagtgtaatttttaatttatttgagtgct 120
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatacatttataaaagtgtctgtgtaaatgaaagtgtaatttttaatttatttgagtgct 320
Query: 121 ggctaatagttcccatgatttagtaaagatatctgcttaaagccagatgtggttgtgcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctaatagttcccatgatttagtaaagatatctgcttaaagccagatgtggttgtgcag 380
Query: 181 gcccttaatctcagcaccagggaggcaggaacagacagatctttgtgagtctaggccagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcccttaatctcagcaccagggaggcaggaacagacagatctttgtgagtctaggccagc 440
Query: 241 ctggattttatagtgagctccagattggctgggactaacagtaagactctgtttcaaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggattttatagtgagctccagattggctgggactaacagtaagactctgtttcaaaaa 500
Query: 301 acagaatcagaaagcctaccataactattgtgaagataatcctatgttggacctgcttcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagaatcagaaagcctaccataactattgtgaagataatcctatgttggacctgcttcc 560
Query: 361 ggtatttgctactgcctttcctatttgttaaaatgccattggaaggaaagtgaatactgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtatttgctactgcctttcctatttgttaaaatgccattggaaggaaagtgaatactgt 620
Query: 421 agctggatagccacccattgggcttgatttgaaggttccacctccagtatttatttagct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agctggatagccacccattgggcttgatttgaaggttccacctccagtatttatttagct 680
Query: 481 cttaacagcagagaaagtactttgaatgctgtctaaaatctgcaggaattta 532
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttaacagcagagaaagtactttgaatgctgtctaaaatctgcaggaattta 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_o09.g1 MSMg01no115_o09.g1 CHROMAT_FILE:
MSMg01no115_o09.g1 PHD_FILE: MSMg01no115_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:58 2005
(536 letters)
>mm_chr2_112230511_112231446
Length = 936
Score = 940 bits (486), Expect = 0.0
Identities = 515/532 (96%), Gaps = 12/532 (2%)
Strand = Plus / Minus
Query: 1 aggtcattaggcttggtaccaagtgcttttacccactgaggcatctcttcagtacaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aggtcattaggcttggtaccaagtgcttttacccactgaggcatctcttcagtacaaatt 612
Query: 61 aactttaaaattattattcgtggtggtgttacgtacttgcgtgctctctctgtctctccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aactttaaaattattattcgtggtggtgttacgtacttgcgtgctctctctgtctctccc 552
Query: 121 tccctctctctctctgtctctgtctctgtctctctctctctctctctctctctctctctc 180
|||||||||||||||||||||| |||||||||||||||||| | | | |
Sbjct: 551 tccctctctctctctgtctctg------------tctctctctctctctctcacacacac 504
Query: 181 acacacacacacacaatgtacatgcatgtacactaatgggaattcagaggacaactttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acacacacacacacaatgtacatgcatgtacactaatgggaattcagaggacaactttgt 444
Query: 241 ggaggcttatgcagacaagtgcttttacccatcctgagcaatctcaaagcagcacctccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggaggcttatgcagacaagtgcttttacccatcctgagcaatctcaaagcagcacctccc 384
Query: 301 cctcctcaaattcttgatcttcctgctccaagctcccactttttgaaactacaggcacat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cctcctcaaattcttgatcttcctgctccaagctcccactttttgaaactacaggcacat 324
Query: 361 accaccatgcctggcttaaggagagaatattttgagagtcaaagctgattccaaagtagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 accaccatgcctggcttaaggagagaatattttgagagtcaaagctgattccaaagtagc 264
Query: 421 aggcaatttggcagaagagtggtattgaacactacacagaaatcaaaaggaaaagaaggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aggcaatttggcagaagagtggtattgaacactacacagaaatcaaaaggaaaagaaggg 204
Query: 481 ggctaaggggacaatgacatgagatcaggcggagaatgtggggagagacaca 532
||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 203 ggctaaggggacaatgacatgagatcagggggagaatgtggggagagacaca 152
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
