Query= MSMg01no116_b02.b1 MSMg01no116_b02.b1 CHROMAT_FILE:
MSMg01no116_b02.b1 PHD_FILE: MSMg01no116_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:12 2005
(483 letters)
>mm_chr2_168517124_168518005
Length = 882
Score = 849 bits (439), Expect = 0.0
Identities = 472/483 (97%), Gaps = 1/483 (0%)
Strand = Plus / Plus
Query: 1 ttactcctgtaattttcttggtacccagtggaatttgaaatggagaaattagcctgactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttactcctgtaattttcttggtacccagtggaatttgaaatggagaaattagcctgactt 260
Query: 61 gctttcctgctccaccagggggcaccaacaactccaagcaggaagggttagagctctgga 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 gctttcctgctccaccagggggcaccaacaactccaggcaggaagggttagagctctgga 320
Query: 121 ggactccaggctcagggctggttccagcaccaaagccttgatgtcagacagatatctgaa 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 ggactccaggctcagggctggttccagcaccaaagccttgatgttagacagatatctgaa 380
Query: 181 gccctaccccaccctcggctccagcgaactcctcctcaggaggtcctcccaactttacaa 240
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 381 gccctgccccaccctcggctccagtgaactcctcctcaggaggtcctcccaactttacga 440
Query: 241 aacttcacttacagtctctggttttattagcaaatgtatgccaagggcctaacgtcaacg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 aacttcacttacagtctctggttttattagcaaatgtatgccaagggcctaacgttaacg 500
Query: 301 accacacccaggttcagctctttgccaatggttaagcctaacttactgctgaagccgtca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 accacacccaggttcagctctttgccaatggttaagcctaacttactgctgaagccgcca 560
Query: 361 cccctgggcctgtgtgtctgtgaacttgacagagaacaggctttcgaggggctcgacagg 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 cccctgggcctgtgtgtctgtgaacttgacagagaacaggctttc-aggggctcgacagg 619
Query: 421 gcgtcattctatcaacactgagatttctctctaaatccttcacactttttctttttacaa 480
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 620 gattcattctatcaacactgagatttctctctaaatccttctcactttttctttttacaa 679
Query: 481 taa 483
|||
Sbjct: 680 taa 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 882
Length adjustment: 10
Effective length of query: 473
Effective length of database: 872
Effective search space: 412456
Effective search space used: 412456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_b02.g1 MSMg01no116_b02.g1 CHROMAT_FILE:
MSMg01no116_b02.g1 PHD_FILE: MSMg01no116_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:12 2005
(201 letters)
>mm_chr2_168671613_168672215
Length = 603
Score = 358 bits (185), Expect = e-103
Identities = 195/199 (97%), Gaps = 2/199 (1%)
Strand = Plus / Minus
Query: 1 tagtccttagaggcctgagggctcagaggcgcctgagttctgggttagcctgggttacat 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 399 tagtccttagaggcctgagggcttagaggcgcctgagttctgggttagcctgggttacat 340
Query: 61 gacattgtcttt--aaaaaaaaaaaaaaagtaacgagcaaaaagatacaaagaactaaga 118
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gacattgtctttaaaaaaaaaaaaaaaaagtaacgagcaaaaagatacaaagaactaaga 280
Query: 119 actagacaccacctcccacagttcccttctccatgggaagggattgttcctcccgctgtg 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 279 actagacaccacctcccacagttcccttctccatgggaagggattgttcctcccactgtg 220
Query: 179 ggtggtgggtggtgggtgg 197
|||||||||||||||||||
Sbjct: 219 ggtggtgggtggtgggtgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 603
Length adjustment: 8
Effective length of query: 193
Effective length of database: 595
Effective search space: 114835
Effective search space used: 114835
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
