BAC Information

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BAC

Clone NameMSMg01-116D06
Chromosome2 (Build37)
Map Location 131,762,892 - 131,763,381
singlet/doubletsinglet
Overlap genePrnp
Upstream geneAtrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d, Lamr1-ps1
Downstream genePrnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906, Chgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116D06.T7 (MSMg01no116_d06.b1)MSMg01-116D06.TJ (MSMg01no116_d06.g1)
ACCAG327640AG327641
length707708
length of high quality
(start - end)
528 (77 - 604)490 (83 - 572)
definitionCHROMAT_FILE: MSMg01no116_d06.b1 PHD_FILE: MSMg01no116_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:23 2005CHROMAT_FILE: MSMg01no116_d06.g1 PHD_FILE: MSMg01no116_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTCGCTTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCAACTTATCCCGACTCCAGGGACCTCCCAGAGATTGA
GTCACCAGGAGCAGACACCAACTGGACTGTCAGAGTCCCCTGGCACAAAT
ATAGCAGAGGTCTGGCTGCCGCAGACCCTCTGGGTCCCTTTGTCTTCGTG
GACGGGGCTCTGGGTGCAGATGGGCAAGGAGTCAGCAGGAATGACAGACA
GATGCACACAGGAGATTGTGTAGAATCTGAATGTATTTTGTCAAGTCGAG
CATCAAACTTTTTATACAGAAGAATAGCAAGAAACCAGCCGAGATACAAT
CCACCAAGTTACAGTGACACAATACAAAAGGAATGTATACATCAAAAGAA
GGTGGGGACCAGGCCACTGTCACTAAGAAGGGAGACAGGTGTAAAGCTAG
TCTATTGTTAAGCCCACCACCAGGGGTTCTACTTTAGCATACCTTCTCAT
GAATACTGCAATACCACAACCCCTCTATTTCCTGGGCCCTGATAATTTCT
AGTATGAGTGTAACTTTTAAGTATCTGTGGAGAATCTCCATTTGTCAGAA
GAATTCACCAACTTGCTTCTAATATGCAATGTAGCCTGTACTGAGGATTT
CTATCTCAGTGGGATTCCCTGCCTCTTTCATGGTATTCCCTTGTTTGTGT
GAGATTG
TTTTTGGTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACGTGTGGACGCTCTAG
CTATCCCAGGTGGGAGGCTGTTTTCCAGGGCGCCATCCCCAAACAGTGGC
TTCTTTGGTTGTAGAACCCTTTGCCTATGCTAAGTTACATGTGTCACTGT
CACCTTGTACTCTGGGTACAAGTCAGGGGATACACCAGTATTTATTCACT
AGACCAAAACAAAGCCCCAACTAGCCAGCAGTTATTTGGTGTTATATTCT
TATTGGCCCGGTGTTAGCACTGGCTGATGACAGACTCCATCAAAGGGACC
TGAAGCAAAGAGCAACTGGTCTACTGTACATTTCCCAGGGCCCATCAGTG
CCAGGGGTATTAGCCTATGGGGGACACAGAGAAGCAAGAATGAGAACCAC
CTCAATTGAAAGAGCTACAGGTGGATAACCCCTCCCCCAGCCTAGACCAC
GAGAATGCGAAGGAACAAGCAGGAAGGCCTCCCTCATCCCACGATCAGGA
AGATGAGGAAGGAGATGAGGAGGATGACAGGAGGGGAGGAGAAAAGCACG
GTGCTGCTGGATCTTCTCCCGTCGTAATAGGCCTGGGACTCCTTCTGGTA
CTGGGTGACGCACATCTGCTCCACCACGCGCTTCCTCATCTTCACATCGG
CCTCGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_d06.g1 MSMg01no116_d06.g1 CHROMAT_FILE:
MSMg01no116_d06.g1 PHD_FILE: MSMg01no116_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:24 2005
         (490 letters)



>mm_chr2_131762692_131763581
          Length = 890

 Score =  940 bits (486), Expect = 0.0
 Identities = 489/490 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacgtgtggacgctctagctatcccaggtgggaggctgttttccagggcgccatccccaa 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 cacgtgtggatgctctagctatcccaggtgggaggctgttttccagggcgccatccccaa 631

                                                                       
Query: 61  acagtggcttctttggttgtagaaccctttgcctatgctaagttacatgtgtcactgtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 acagtggcttctttggttgtagaaccctttgcctatgctaagttacatgtgtcactgtca 571

                                                                       
Query: 121 ccttgtactctgggtacaagtcaggggatacaccagtatttattcactagaccaaaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ccttgtactctgggtacaagtcaggggatacaccagtatttattcactagaccaaaacaa 511

                                                                       
Query: 181 agccccaactagccagcagttatttggtgttatattcttattggcccggtgttagcactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 agccccaactagccagcagttatttggtgttatattcttattggcccggtgttagcactg 451

                                                                       
Query: 241 gctgatgacagactccatcaaagggacctgaagcaaagagcaactggtctactgtacatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gctgatgacagactccatcaaagggacctgaagcaaagagcaactggtctactgtacatt 391

                                                                       
Query: 301 tcccagggcccatcagtgccaggggtattagcctatgggggacacagagaagcaagaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tcccagggcccatcagtgccaggggtattagcctatgggggacacagagaagcaagaatg 331

                                                                       
Query: 361 agaaccacctcaattgaaagagctacaggtggataacccctcccccagcctagaccacga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 agaaccacctcaattgaaagagctacaggtggataacccctcccccagcctagaccacga 271

                                                                       
Query: 421 gaatgcgaaggaacaagcaggaaggcctccctcatcccacgatcaggaagatgaggaagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gaatgcgaaggaacaagcaggaaggcctccctcatcccacgatcaggaagatgaggaagg 211

                     
Query: 481 agatgaggag 490
           ||||||||||
Sbjct: 210 agatgaggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)