TTTCCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAGGCTCACACCTAAACATAATAAAAGCAATCTACAGC
AAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCC
ACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCA
ACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATC
AAGGGGATACAAATTGGAAAAGAGGAAGCCAAAATATCACTTTTTGCAGA
TGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCC
TAAACCTGATAAACAGCTTTGGTGAAGTAGCTGGATATAAAATTAACTCA
AACAAGTCAATGGCTTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGA
AATTAGGGAAACAACACCGTTCTCAATAGTCACAAATAATATAAACTATC
TCGGCGTGACTCTAACTAAGGAAGTAAAAGATCTGTATGATAAAAACTTC
AAGTCTCTGAAGAAAGAACTTAACGAAGATCTCAGAAGATGGAAAGATCT
CCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGC
CAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAA
TTCTTTCACGAATTAAA

NTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACTTTCCTGGATTTCCT
TTTCTGGTCTCTAGAGAATCTCTACCGGCTAATGTTCTTTTCTGTGTATT
TTCTATATGCAGGAAAATTTAGATCCTTTGGGCTAGAGAGCCAAAAGGGT
AAAATTAATACTGACTTTCAGGTTTAGCCTTTTAAAAGTATGACCCAATA
AATTATTTCACCTTTATTTTTTTATTATTTCTGCCTTTCCGTATCATTTT
AGGCATTTGATTGAGCTACTCAAAAGAACTGCTATCTATGGAGAAAGCAA
TTCTGTACTCATTGTTGGACCACGAGGATCAGGAAAGACCACAGTAAAAG
ACTTAAGTTTCTCATATATCATTGCTTTAATACACATTTGAAGCTTTTAT
ATCAGATACACTAAAAATGTTTTTCGTTTTATTGTCTTGCAACATTCTTT
GTTTTCTATTCCTTTTAAATGACAAAATCCATGCTGGTATTCTACAAAGT
TAGGTTGTGGTATGGGAGTTGATCATGCTTTTTATGTTCTCTGCTTGGTA
TATTGCCCTATACTGGGGCAGGGATCTCAATCCTCCCATCTGCCACTGAG
AGAATAAGGTCTATGCTTCCATACCTACTTGGCCTCTGAGGGTCCTAACT
CATGACTTCACGGGT

Query= MSMg01no116_h03.g1 MSMg01no116_h03.g1 CHROMAT_FILE:
MSMg01no116_h03.g1 PHD_FILE: MSMg01no116_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:42 2005
         (457 letters)



>mm_chr2_48791951_48792806
          Length = 856

 Score =  845 bits (437), Expect = 0.0
 Identities = 449/453 (99%), Gaps = 1/453 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccactttcctggatttccttttctggtctctagagaatctctaccggctaatgttctttt 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 652 ccactttcctggatttccttttctggtctctagagaatctctagcggctaatgttctttt 593

                                                                       
Query: 61  ctgtgtattttctatatgcaggaaaatttagatcctttgggctagagagccaaaagggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ctgtgtattttctatatgcaggaaaatttagatcctttgggctagagagccaaaagggta 533

                                                                       
Query: 121 aaattaatactgactttcaggtttagccttttaaaagtatgacccaataaattatttcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aaattaatactgactttcaggtttagccttttaaaagtatgacccaataaattatttcac 473

                                                                       
Query: 181 ctttatttttttattatttctgcctttccgtatcattttaggcatttgattgagctactc 240
           |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cttt-tttttttattaattctgcctttccgtatcattttaggcatttgattgagctactc 414

                                                                       
Query: 241 aaaagaactgctatctatggagaaagcaattctgtactcattgttggaccacgaggatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aaaagaactgctatctatggagaaagcaattctgtactcattgttggaccacgaggatca 354

                                                                       
Query: 301 ggaaagaccacagtaaaagacttaagtttctcatatatcattgctttaatacacatttga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ggaaagaccacagtaaaagacttaagtttctcatatatcattgctttaatacacatttga 294

                                                                       
Query: 361 agcttttatatcagatacactaaaaatgtttttcgttttattgtcttgcaacattctttg 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 agtttttatatcagatacactaaaaatgtttttcgttttattgtcttgcaacattctttg 234

                                            
Query: 421 ttttctattccttttaaatgacaaaatccatgc 453
           |||||||||||||||||||||||||||||||||
Sbjct: 233 ttttctattccttttaaatgacaaaatccatgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 856
Length adjustment: 10
Effective length of query: 447
Effective length of database: 846
Effective search space:   378162
Effective search space used:   378162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)