Query= MSMg01no116_h24.b1 MSMg01no116_h24.b1 CHROMAT_FILE:
MSMg01no116_h24.b1 PHD_FILE: MSMg01no116_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:46 2005
(477 letters)
>mm_chr2_6799589_6800465
Length = 877
Score = 721 bits (373), Expect = 0.0
Identities = 388/393 (98%), Gaps = 1/393 (0%)
Strand = Plus / Minus
Query: 83 taattgtttgtattgtttttaattatgtctacggtgtatctaggtatgttcatgtgagag 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 taattgtttgtattgtttttaattatgtctacggtgtatctaggtatgttcatgtgagag 818
Query: 143 agttatggggatatgtgttgtgattttgtattggatgcctgggagctggagttacagagg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 agttatggggatatgtgttgtgattttgtattggatgcctgggagctggagttacagagg 758
Query: 203 gttgtaaggcctacaaatagggtgctgggaactgaactctggttctctgcatgtattagt 262
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 757 gttgtaaggcctacaaatagggtgctgggaactgaactctggttctctgcatg-agtagt 699
Query: 263 atgtgatcttcaccactgaaccaggtatttgtcatcttaaaacctatgttgcagctctcc 322
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 698 atgtgatcttcaccactgaaccaggtatttgccatcttaaaacctatgtcgcagctctcc 639
Query: 323 cacagaagcctttgattggcagctgcttctttctattgtcattggtccattcatcagtgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 cacagaagcctttgattggcagctgcttctttctattgtcattggtccattcatcagtgg 579
Query: 383 actgcccactcaagggcgcatcaagatgctggtcatagctaacggttttaactgctctat 442
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 578 actgcccactcaagggcgcatcaagatgctggccatagctaacggttttaactgctctat 519
Query: 443 ccttcctggatcacagtttgtttgtttgttttg 475
|||||||||||||||||||||||||||||||||
Sbjct: 518 ccttcctggatcacagtttgtttgtttgttttg 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_h24.g1 MSMg01no116_h24.g1 CHROMAT_FILE:
MSMg01no116_h24.g1 PHD_FILE: MSMg01no116_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:46 2005
(271 letters)
>mm_chr2_6682199_6682869
Length = 671
Score = 493 bits (255), Expect = e-144
Identities = 267/271 (98%)
Strand = Plus / Plus
Query: 1 tctcataacctggagaactggcactggatatatcctcacatcaagttcttgtcataaaca 60
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 tctcataacctggagagctggcactggatatatcctcacatcaagttcttgtcataaaaa 260
Query: 61 aagggaaaagtctgagacaggaaaattgatatatgaagaactaatgacgttgaacaactg 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 aagggaaaagtctgagacaggaaaattgatatatgaagaactaatgatgttgaacaactg 320
Query: 121 ttttcaaacataaaaactcatcacactacataaaatggtgaattctactttagccaagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttcaaacataaaaactcatcacactacataaaatggtgaattctactttagccaagtc 380
Query: 181 agaatttgttaaacaaaaggcagtaaggattcaaacctaaacacacctgattctttttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaatttgttaaacaaaaggcagtaaggattcaaacctaaacacacctgattctttttta 440
Query: 241 aatagtaatttttaatagtatatatgtgtgt 271
||||||||||||||||||||| |||||||||
Sbjct: 441 aatagtaatttttaatagtatgtatgtgtgt 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space: 173444
Effective search space used: 173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
