TTCTCCTTAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCATGTTAATTTCAAAGACTAGTAACATTAATTTCAC
TCAATAAGAATATAGGAAAAACAAACAAAACAGAACAAACCCTCATTTGT
AGCATCCAAATACCTATAGCTTATTGGACTTCTTAGGCTAAGTACATAGC
AAATTACCCACTGTCCTCACAAGTGCTTGTATCTAGCTTTAGTATCTCCC
CAAATTATTTTATGCATATTTGTAACCACTGTAACAACATACAAAAATCA
TTGTTATCCTTTTGGTTTTCTACATTTTCCTGATTCAGTAGTTCTTCATT
GCTGAGGTGTAAGTCACATTGACATAGCATATTTTTACACCAACTGTGAG
CAGTCTGACTTTATGCTGAAGTGATGTGCATCCATATCTAGATGTCAAAT
AATGTAAAATTTAAATAGCAATAACTGTCACCAGATTGGTTCTCTGAGTT
CTGTGTGGCTATTTCTTTCTATTTATTTTTATGTTTCTGTTAAGAGAAAG
TAGGTCGTGGGACAATAAGTTTATTTTCTATCCTATTCCTTACCCCTCCT
TCTACCTTGTTTAAAATTTGGACTCTTATATCAGATATTTGTGCATGCTC
TTCACATGGCCAGTCATCAATGAATTTAGTGCAGTTGTCTCTGGATTTCA
ATCATAT

CCANGGAACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGTTGGGATTGCAAGCTTGTACAACCACTCT
GGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGGAG
GATTCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCCCAAAGGAACTCACACAATATGTACTCACTG
ATAAGTGGATATTAGCCCAAAATCTAGGATACCCAAGATATAAGATACAA
TTTCCCAAA

Query= MSMg01no116_o06.b1 MSMg01no116_o06.b1 CHROMAT_FILE:
MSMg01no116_o06.b1 PHD_FILE: MSMg01no116_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:16 2005
         (565 letters)



>mm_chr2_16420950_16421915
          Length = 966

 Score = 1079 bits (558), Expect = 0.0
 Identities = 564/566 (99%), Gaps = 1/566 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagtaacattaatttcactcaataagaatataggaaaaac-aaacaaaacagaacaaacc 59
           ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 tagtaacattaattttactcaataagaatataggaaaaacaaaacaaaacagaacaaacc 260

                                                                       
Query: 60  ctcatttgtagcatccaaatacctatagcttattggacttcttaggctaagtacatagca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcatttgtagcatccaaatacctatagcttattggacttcttaggctaagtacatagca 320

                                                                       
Query: 120 aattacccactgtcctcacaagtgcttgtatctagctttagtatctccccaaattatttt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattacccactgtcctcacaagtgcttgtatctagctttagtatctccccaaattatttt 380

                                                                       
Query: 180 atgcatatttgtaaccactgtaacaacatacaaaaatcattgttatccttttggttttct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcatatttgtaaccactgtaacaacatacaaaaatcattgttatccttttggttttct 440

                                                                       
Query: 240 acattttcctgattcagtagttcttcattgctgaggtgtaagtcacattgacatagcata 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acattttcctgattcagtagttcttcattgctgaggtgtaagtcacattgacatagcata 500

                                                                       
Query: 300 tttttacaccaactgtgagcagtctgactttatgctgaagtgatgtgcatccatatctag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttttacaccaactgtgagcagtctgactttatgctgaagtgatgtgcatccatatctag 560

                                                                       
Query: 360 atgtcaaataatgtaaaatttaaatagcaataactgtcaccagattggttctctgagttc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtcaaataatgtaaaatttaaatagcaataactgtcaccagattggttctctgagttc 620

                                                                       
Query: 420 tgtgtggctatttctttctatttatttttatgtttctgttaagagaaagtaggtcgtggg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgtggctatttctttctatttatttttatgtttctgttaagagaaagtaggtcgtggg 680

                                                                       
Query: 480 acaataagtttattttctatcctattccttacccctccttctaccttgtttaaaatttgg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaataagtttattttctatcctattccttacccctccttctaccttgtttaaaatttgg 740

                                     
Query: 540 actcttatatcagatatttgtgcatg 565
           ||||||||||||||||||||||||||
Sbjct: 741 actcttatatcagatatttgtgcatg 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 966
Length adjustment: 10
Effective length of query: 555
Effective length of database: 956
Effective search space:   530580
Effective search space used:   530580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)