BAC Information

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BAC

Clone NameMSMg01-117D22
Chromosome2 (Build37)
Map Location 20,786,027 - 20,884,197
singlet/doubletdoublet
Overlap geneArhgap21
Upstream geneLOC100041302, LOC433406, LOC654360, LOC667609, Etl4
Downstream geneLOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117D22.T7 (MSMg01no117_d22.b1)MSMg01-117D22.TJ (MSMg01no117_d22.g1)
ACCAG328427AG328428
length711710
length of high quality
(start - end)		510 (65 - 574)516 (73 - 588)
definitionCHROMAT_FILE: MSMg01no117_d22.b1 PHD_FILE: MSMg01no117_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:44 2005CHROMAT_FILE: MSMg01no117_d22.g1 PHD_FILE: MSMg01no117_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,786,027 - 20,786,534)(20,883,758 - 20,884,197)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCANAAATGCGCGGAATTCC
AGGACAGCCACCGCTACACAGAGAAACCCTGTGTTGAAAATCCAAAACCA
AACAAACAAGCAAAAAACCAAAAACCCCAAAACAAAACAAAACAAAATAA
ATAAAGAAGTCCATGGAATATTTTTTTTCCTCCTGCTGCTAGGAATTGAC
TCTGAGTATTGCTTGTATCAGTCAAGGGCTGTAACATTGAGCCGTATCTC
TGACAACAATAAACAAAACCAGAACCCCAACCCCCCACCATAATACAAGT
AAAAAAATCAAGTTTTAGATCAGGGACATAATAAAACACTCCAGGAGGAG
AGTCCTGGAAAGAACATGTACTAACAGGAAATGATGTCACCAAAACCATC
AGCTCTGCATGGGAAAGTGGGGCTGTCCAGATCCAAGCCTGTTTGCAAAT
CTAAACTCTTTAGCAGCACTGAAGTCTTCTTATGCAATGATTTTATTTCG
CTGGATTCTATCTACTGAAGCACATGCTGATAACATTATACTTGTTTATA
TCATTTAGTGTTTGTAAAATAATATGAACTAAAAATTAAGAGGGGAATTG
AAAAGAACTAGGCTACCTATTTCTAGATGACTACTGAGGGGACTATTCCT
CATTGACGAAAAAACCTCTCTAAAAGCCGGTCCCGGTAAAGAAAGACATA
GGGTTCCTTCT

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGATGCCCACATCCTACTAACCTGGGCA
CACAGACTCCATCTGCCCTTGGAAAGAAGCAGGCAACTCCAGAGCCAACC
TGCTGATTCTCTGCCTCCTGCTGCTCACCGTCCCCATTTGCTCTCTCTGG
GCATGCTCATCACAAGCAATAGCAGCCCTGCTCTGCAGGCTCTGGAATGA
TTGCTGTCTCTTTTTTAGCTCCTACATGACATGCATATTTGCTCGACTGA
CTTCTCTCTCAGCTTGCTCTGCTAGTGTCTTCTCCATGTTGTAAGCAGAG
CAGACTTTTTATGAATCAAATCATGTCCCTCCTTCACTCAAATTTCTTTA
AAGCCTTTCATTTCCTTAAAAGTTACAGGGCAGAGTTCTTTCAGTGACCT
TCAGGGCTTTTCCCTTTCACCTTCCTGCCCTCACTTCCTGTTACTCTTCC
CCTCATTCCATACTGGCTATCCCAGACTTTTGCTACGCTGCACACAGAGA
CTAAGTGTCAAGCCTCCCACCTGCTGACCCCTTGTGCCGAGCTCTTCCTG
GACTCTGCATGACTCGCGCTTGTGTCCAATTTGTGTTTACAGGCCACCTT
CTGTGTGACGCATTGCCCCCACCCTGCCTTAGTGCACAGTGCCAGTCTTG
CTCTTGGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_d22.b1 MSMg01no117_d22.b1 CHROMAT_FILE:
MSMg01no117_d22.b1 PHD_FILE: MSMg01no117_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:44 2005
         (510 letters)



>mm_chr2_20785827_20786736
          Length = 910

 Score =  928 bits (480), Expect = 0.0
 Identities = 501/508 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacacagagaaaccctgtgttgaaaatccaaaaccaaacaaacaagcaaaaaaccaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacacagagaaaccctgtgttgaaaatccaaaaccaaacaaacaagcaaaaaaccaaaaa 260

                                                                       
Query: 61  ccccaaaacaaaacaaaacaaaataaataaagaagtccatggaatattttttttcctcct 120
           | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 ctccaaaacaaaacaaaacaaaataaacaaagaagtccatggaatattttttttcctcct 320

                                                                       
Query: 121 gctgctaggaattgactctgagtattgcttgtatcagtcaagggctgtaacattgagccg 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgctagggattgactctgagtattgcttgtatcagtcaagggctgtaacattgagccg 380

                                                                       
Query: 181 tatctctgacaacaataaacaaaaccagaaccccaaccccccaccataatacaagtaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatctctgacaacaataaacaaaaccagaaccccaaccccccaccataatacaagtaaaa 440

                                                                       
Query: 241 aaatcaagttttagatcagggacataataaaacactccaggaggagagtcctggaaagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 aaatcaagttttagatcagggacataataaaacactccaggaggagagtcctggaaagat 500

                                                                       
Query: 301 catgtactaacaggaaatgatgtcaccaaaaccatcagctctgcatgggaaagtggggct 360
           |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 catgtactgacaggaaatgatgtcagcaaaaccatcagctctgcatgggaaagtggggct 560

                                                                       
Query: 361 gtccagatccaagcctgtttgcaaatctaaactctttagcagcactgaagtcttcttatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtccagatccaagcctgtttgcaaatctaaactctttagcagcactgaagtcttcttatg 620

                                                                       
Query: 421 caatgattttatttcgctggattctatctactgaagcacatgctgataacattatacttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caatgattttatttcgctggattctatctactgaagcacatgctgataacattatacttg 680

                                       
Query: 481 tttatatcatttagtgtttgtaaaataa 508
           |||||| |||||||||||||||||||||
Sbjct: 681 tttataccatttagtgtttgtaaaataa 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no117_d22.g1 MSMg01no117_d22.g1 CHROMAT_FILE:
MSMg01no117_d22.g1 PHD_FILE: MSMg01no117_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:44 2005
         (516 letters)



>mm_chr2_20883758_20884673
          Length = 916

 Score =  835 bits (432), Expect = 0.0
 Identities = 438/440 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatgcccacatcctactaacctgggcacacagactccatctgcccttggaaagaagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agatgcccacatcctactaacctgggcacacagactccatctgcccttggaaagaagcag 381

                                                                       
Query: 61  gcaactccagagccaacctgctgattctctgcctcctgctgctcaccgtccccatttgct 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcaactccagagccaacctgctgcttctctgcctcctgctgctcaccgtccccatttgct 321

                                                                       
Query: 121 ctctctgggcatgctcatcacaagcaatagcagccctgctctgcaggctctggaatgatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctctctgggcatgctcatcacaagcaatagcagccctgctctgcaggctctggaatgatt 261

                                                                       
Query: 181 gctgtctcttttttagctcctacatgacatgcatatttgctcgactgacttctctctcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gctgtctcttttttagctcctacatgacatgcatatttgctcgactgacttctctctcag 201

                                                                       
Query: 241 cttgctctgctagtgtcttctccatgttgtaagcagagcagactttttatgaatcaaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cttgctctgctagtgtcttctccatgttgtaagcagagcagactttttatgaatcaaatc 141

                                                                       
Query: 301 atgtccctccttcactcaaatttctttaaagcctttcatttccttaaaagttacagggca 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 atgtcgctccttcactcaaatttctttaaagcctttcatttccttaaaagttacagggca 81

                                                                       
Query: 361 gagttctttcagtgaccttcagggcttttccctttcaccttcctgccctcacttcctgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  gagttctttcagtgaccttcagggcttttccctttcaccttcctgccctcacttcctgtt 21

                               
Query: 421 actcttcccctcattccata 440
           ||||||||||||||||||||
Sbjct: 20  actcttcccctcattccata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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