BAC Information

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BAC

Clone NameMSMg01-117J14
Chromosome2 (Build37)
Map Location 73,984,161 - 73,984,665
singlet/doubletsinglet
Overlap geneLOC100040172
Upstream geneGtpbp9, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1, Atf2, Atp5g3, LOC667729
Downstream geneLnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117J14.T7 (MSMg01no117_j14.b1)MSMg01-117J14.TJ (MSMg01no117_j14.g1)
ACCAG328689AG328690
length698780
length of high quality
(start - end)
508 (43 - 550)47 (78 - 124)
definitionCHROMAT_FILE: MSMg01no117_j14.b1 PHD_FILE: MSMg01no117_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:12 2005CHROMAT_FILE: MSMg01no117_j14.g1 PHD_FILE: MSMg01no117_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCAAGAGTCCCCGAATTAGACAGTTGACTAGGTTTCCATGGGACACCT
TGCTTCCCTGGTGTCTGCTGCCATCAAGGCCACCGATCTTCTTTCCTTTC
CTTAAAAGAAAGATCCATTTATTTTTAATTATGTGTGAGGAGTGGGTACA
AGTGAGTGCGGATACCTGCCAAGGCCAGAGGTGTTCAGTTCTGTGGAGAT
GGAGGTGGTTATGAGCTGCTCCCGTGGGTGTTGGGGACTCAAACGAGGGT
CTTCTGGGAGAACCTCATAGGCTCATAACTGCTGCAAATCTCTCCAGGCT
GCAGCCGCCTTTAAAATGTTTACTTTTAATTACATGCATGGTGTATGTCT
ATATATTAAAAGATTTATTTTATTTTTTAATTATTTAAGACCTATCTAAA
TTAGATTGCTTCTCATCCGGAGTAGACCTCACTAAATTTTCATTTCATAA
GTTAGCTGTGGGGCTGCAGAGAGTAGATGATGTTCTTGCAGAACTAAGAT
TAGTTCCTAACACCCAAATCAAGTGGATCATGGCCACCTGTCAGTTTCAG
CTCCAGGTGATCCCATGGCCTCCATAGGCCCTGCACTCTCGTGAGGATAG
CCCTTCATTCCATCCCTCATAAACATAATTTAAACATAAAATAAACCT
NAACAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTAAGATAATCGGTTTTTTTTCA
AATACTTAACTTACAAATCAATTCACTCGTCTGTGTGTCTGTGTGTGTCT
GTGTGTGTGTGTGTGTGTGTATGTGTGTTTCTTCTTCTTATTTCCTCCCT
TCTTTCCCTCCTCCCCCTCTCTCCTCTTCTCCCCTTCTTTCCCCCCCCTC
TTCCTTTCTCTCCCTCTTCTCTCCCCCCTCCCTTTCCTTTCTTTTTTTCC
TTTCCCACCCCCCTCCTTCCTTCTTTTTTTTTCTCTTTCCCTTCTCTTCT
TCTCTCCTCTTATATACTTCCCCCCCCCTCCCCCCCTTTCCCCTTTCCCC
CCCTCCCCCCCCCCCCCTTCTTCCCCCCCTCCCCCACCCCCTCTTTCCTC
CCTTCATCCCCTCCCTTCTCCCTTCTTCCCTCTCCCCCTTCTCCCCCCCC
TCTCCTCCTCCCCCCTCTCCTCCTTCTCCCCCCCCCCTCTCCCCACCCTC
CTTCCTCCCCATCTCTCCCTCTCACTCTCCCCCCCAACTACCCTCTTTTT
CTCTCTATTACCCACACATCTTCCCCTTTTCCTCACTCCCCCTCCTCCTC
CTTCCATTCCTCCTCCACACTCCCCTCTCTCCCCCTCTAATCTCTTCCTC
CCCCTCACCCCTCTCCTCCCCCCCTCCCCTCTCCCCCTCCCTCCCCCCTC
CCCCTCTCCCACCCCTCTCCCCCCCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_j14.b1 MSMg01no117_j14.b1 CHROMAT_FILE:
MSMg01no117_j14.b1 PHD_FILE: MSMg01no117_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:12 2005
         (508 letters)



>mm_chr2_73983958_73984865
          Length = 908

 Score =  899 bits (465), Expect = 0.0
 Identities = 495/505 (98%), Gaps = 1/505 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccaagagtccccgaattagacagttgactaggtttccatgggacaccttgcttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcccaagagtccccgaattagacagttgactaggtttccatgggacaccttgcttc 263

                                                                       
Query: 65  cctggtgtctgctgccatcaaggccaccgatcttctttcctttccttaaaagaaagatcc 124
           ||| |||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||
Sbjct: 264 cctagtgtctgctgccatcaaggccaccaatcttctttcctttccttaaaaaaaaaatcc 323

                                                                       
Query: 125 atttatttttaattatgtgtgaggagtgggtacaagtgagtgcggatacctgccaaggcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atttatttttaattatgtgtgaggagtgggtacaagtgagtgcggatacctgccaaggcc 383

                                                                       
Query: 185 agaggtgttcagttctgtggagatggaggtggttatgagctgctcccgtgggtgttgggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaggtgttcagttctgtggagatggaggtggttatgagctgctcccgtgggtgttgggg 443

                                                                       
Query: 245 actcaaacgagggtcttctgggagaacctcataggctcataactgctgcaaatctctcca 304
           |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 444 actcaaacgagggtcttctgggagaaccgcacaggctcataactgctgcaaatctctcca 503

                                                                       
Query: 305 ggctgcagccgcctttaaaatgtttacttttaattacatgcatggtgtatgtctatatat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggctgcagccgcctttaaaatgtttacttttaattacatgcatggtgtatgtctatatat 563

                                                                       
Query: 365 t-aaaagatttattttattttttaattatttaagacctatctaaattagattgcttctca 423
           | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 564 ttaaaagatttattttattttttaattatttaagacctatctaaactagattgcttctca 623

                                                                       
Query: 424 tccggagtagacctcactaaattttcatttcataagttagctgtggggctgcagagagta 483
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 624 tccggagtagacctcactaaattttcatttcaaaagttagctgtggggctgcagagagta 683

                                    
Query: 484 gatgatgttcttgcagaactaagat 508
           |||| ||||||||||||||||||||
Sbjct: 684 gatgctgttcttgcagaactaagat 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)