BAC Information

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BAC

Clone NameMSMg01-117K06
Chromosome2 (Build37)
Map Location 95,621,150 - 95,621,460
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042843
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117K06.T7 (MSMg01no117_k06.b1)MSMg01-117K06.TJ (MSMg01no117_k06.g1)
ACCAG328720AG328721
length721717
length of high quality
(start - end)
252 (71 - 322)525 (76 - 600)
definitionCHROMAT_FILE: MSMg01no117_k06.b1 PHD_FILE: MSMg01no117_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:16 2005CHROMAT_FILE: MSMg01no117_k06.g1 PHD_FILE: MSMg01no117_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGC
GGAATTCAAAAAATTTCCAAAGGAATCTCAAATGGTTGAGAAGCACAGAA
AGAAAAGTTCAAAGTCCTTAGTGATCAGAAAAATGCAAACCAAAATGACC
CTGAGATTCCACCTTACCCCCATCAGAATGACTAAGATCACCTAACCCTC
AAGAGACTGGAGGCCTCAGGGAATTTAGAGGTTGGGTGAGGTGAAGGGGG
GGAGGGAACATCCTTGTGGAGTCAGGATGTGGGAAGGAGGTATGGGATGT
GGAACAGTCAGAGGGTGGTCTGGATTGTAATAAAATCTGGAGTGTAAAAA
AAATAATATACAAGAAAAGAGTATTCACAAGTTCACAAGTTAGATTTTCT
TGACAAAACTAAATTTTCATTTGAAAGTGGTAAGTAATTGAAGATAGCTC
CTGTGTTAGGGATGAGGACATGGTTCTACTTTCAGTGCTTGGACCTAACA
TAGTGTATACCTCTGTAAGCTGCCTCATTCTGTGTGAGTTCATATTTGTA
GTATAGCCTCTGACTGAGAGGATCTTATTTTCCTCGCGTTCTTTGTCTAT
CTTGGTTCTTACTCTCTTTCTAGTTCTGTTTTTACAGGTTTTCCCTTATT
CCTTTGGCGAGTAACTTGTCTTACACACTATCCTTTCTTGTTCCGTGCTT
CTTTCTCTTCTTCTTCCTTTA
CCCAATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTCCTTGCAATTGGAAGAAATTCT
TCTTCATTTCTTTGTTGGCTCTTTCCCATGGAACATCCTCCTAAAGGCTG
CTCTTGATTCCCTGATACATGGTTCACTTGCCTTAAGTTCATATCAATAT
TCTTTCATGTAAATAGCAATAATTTCCTTCATTTCCTGTCTGGTTTCTTT
GGAGAATTGGTTTGCCTTAGGTTAGTCTCATCCAGAGCAATCTCCCTTTT
GAATAAACTCAAAGTCATCTGATTAAGAAAATTAATTACAATTAAAATCT
ATCTTCTGCCTAATAACATAAAATAATTATAAGAAGCACAGAAAACAAGG
TTAATAAGTCCCACTCACACACTAGAGGACGAGAATATACTGGAAATGTT
CAAGATATGTAGGGATCTTAGAGATCGTCTTGAAGTTTTTCTGTCATATT
TATATTGTCCTCTATACTGACTAAATGCATAAATCTTTGCTAGAGAGTTC
TGTTGTACAATATAACATGTAAGGATTTTAAGGGATGGTGATTTTAGTGG
CGTTAGTCACAACTGTAGTTGTTACTATTTCATTTGAAACAGTTTTTTTT
TATTTACATATTTTTTATTACTTATATTCCTCAATTATATTTTCCAATGC
TATCCCAAAAGTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_k06.g1 MSMg01no117_k06.g1 CHROMAT_FILE:
MSMg01no117_k06.g1 PHD_FILE: MSMg01no117_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:16 2005
         (525 letters)



>mm_chr2_95620536_95621460
          Length = 925

 Score =  542 bits (280), Expect = e-158
 Identities = 304/312 (97%), Gaps = 2/312 (0%)
 Strand = Plus / Minus

                                                                       
Query: 215 atctcccttttgaataaactcaaagtcatctgattaagaaaattaattacaattaaaatc 274
           |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 atctaccttttgaataaattcaaagtcatctgattaagaaaattaattacaattaaaatc 866

                                                                       
Query: 275 tatcttctgcctaataacataaaataattataagaagcacagaaaacaaggttaataagt 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tatcttctgcctaataacataaaataattataagaagcacagaaaacaaggttaataagt 806

                                                                       
Query: 335 cccactcacacactagaggacgagaatatactggaaatgttcaagatatgtagggatctt 394
           |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 805 cccactcacacactagaggatgagaatatactggaaatgttcaagatgtgtagggatctt 746

                                                                       
Query: 395 agagatcgtcttgaagtttttctgtcatatttatattgtcctctatactgactaaatgca 454
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agagatcgtcttaaagtttttctgtcatatttatattgtcctctatactgactaaatgca 686

                                                                       
Query: 455 taaatctttgctagagagttctgttgtacaatataacatgta-aggattttaagggatgg 513
           |||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||
Sbjct: 685 taaatctttgctagagagttgtgttgtacaatataacatg-acaggattttaagggatgg 627

                       
Query: 514 tgattttagtgg 525
           ||||||||||||
Sbjct: 626 tgattttagtgg 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)