Query= MSMg01no117_l21.b1 MSMg01no117_l21.b1 CHROMAT_FILE:
MSMg01no117_l21.b1 PHD_FILE: MSMg01no117_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:23 2005
(416 letters)
>mm_chr2_55955477_55956291
Length = 815
Score = 754 bits (390), Expect = 0.0
Identities = 408/416 (98%), Gaps = 4/416 (0%)
Strand = Plus / Minus
Query: 1 tgagaattttttttttttggtttgaaacaaataaaaataaaaatcccaacactcaaaaaa 60
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgagaattttttttt----gtttgaaacaaataaaaataaaaatcccaacactcaaaaaa 448
Query: 61 gttcataaatcagaacccatttatattaatagacttttatatttgaaagatatcaacaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gttcataaatcagaacccatttatattaatagacttttatatttgaaagatatcaacaag 388
Query: 121 gaaattaatttaattttgaaatgtaatctattgatttcataaaattataaagatttgaaa 180
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 387 gaaattaatttaattttgaaatgtaatctattgatttcataagattagaaagatttgaaa 328
Query: 181 tataggtatatgccaataaatttatatttataatgtaaagaatgattgtaaatcaatact 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tataggtatatgccaagaaatttatatttataatgtaaagaatgattgtaaatcaatact 268
Query: 241 agaaagaaaatacttaatgaaaatagctcattgtggacacaaactttaaatctttcattc 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 267 agaaagaaaatacttaatgaaaatagcgcattgtggacacaaactttaaatctttcattc 208
Query: 301 tctctctttttctccctctttctctctgtctgcctgtctgtatctatgggcacctgagta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tctctctttttctccctctttctctctgtctgcctgtctgtatctatgggcacctgagta 148
Query: 361 tagctgtgtgtgcatgcatgcatatatgtgtgtgttgtgtgtttgtttgtatgtgt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tagctgtgtgtgcatgcatgcatatatgtgtgtgttgtgtgtttgtttgtatgtgt 92
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 815
Length adjustment: 9
Effective length of query: 407
Effective length of database: 806
Effective search space: 328042
Effective search space used: 328042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_l21.g1 MSMg01no117_l21.g1 CHROMAT_FILE:
MSMg01no117_l21.g1 PHD_FILE: MSMg01no117_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:23 2005
(395 letters)
>mm_chr2_55819233_55820027
Length = 795
Score = 634 bits (328), Expect = 0.0
Identities = 379/396 (95%), Gaps = 2/396 (0%)
Strand = Plus / Plus
Query: 1 atcccagcttctggctattataaataaggctgctatgaacatagatgagcatgtgtcctt 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 atcccagcttctggctattataaataaggctgctatggacatagatgagcatgtgtcctt 260
Query: 61 gttatatgttggagcatattttgggtatacaccacggagtggtatagtt-gagtcctcag 119
||||||||||||||||||||||||||||| |||| |||||||||| ||| ||||||||||
Sbjct: 261 gttatatgttggagcatattttgggtataaaccaaggagtggtat-gtttgagtcctcag 319
Query: 120 gtagttttctgaggaactgccagactggttttcagaatggttataccaggttgtaatccc 179
||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| |
Sbjct: 320 gtagttttctgaggagctgccagactgattttcagaatggttataccaggttgcaatctc 379
Query: 180 accattctagtatttgcttctcagttataatttttatatacttccgtttaaaacgtatgc 239
||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 380 accattctagtatgtgcttctcagttataatttttatatacttccatttaaaacttatgc 439
Query: 240 tattctttatgtatatctttattctgtcttctatttattgaaattctactcatctttaaa 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tattctttatgtttatctttattctgtcttctatttattgaaattctactcatctttaaa 499
Query: 300 gaaaatattagtgttacagttgtgtggctttttatgtgatttattaagttatagcttata 359
||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||
Sbjct: 500 gaaaatattagtgttacagttgtgtggctttctatgtgattaattaaattatagcttata 559
Query: 360 atactttgttgtttttcctattaagattcattggat 395
|||||||||| |||||||||||||||||||||||||
Sbjct: 560 atactttgttctttttcctattaagattcattggat 595
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space: 303396
Effective search space used: 303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
