Query= MSMg01no117_m12.b1 MSMg01no117_m12.b1 CHROMAT_FILE:
MSMg01no117_m12.b1 PHD_FILE: MSMg01no117_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:26 2005
(506 letters)
>mm_chr2_77295344_77296247
Length = 904
Score = 864 bits (447), Expect = 0.0
Identities = 493/515 (95%), Gaps = 15/515 (2%)
Strand = Plus / Minus
Query: 1 ggcttactgtgttcaggtgctgaccctcaacacagaagacagcataaacatccctcaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 752 ggcttactgtgttcaggtgctgaccctcaacacagaagacagcataagcatccctc-aaa 694
Query: 61 aattaccacactgcagtgcaaaatacagagtaaacactctaattgtcttttgtttttgtt 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 693 aattaccacactgcagtgcaaaatacagagtaaacactcgaattgtcttttgtttttg-- 636
Query: 121 tttgtttttttaagaataagcatcccagccacttgaaactccctatgtaaattgtaatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tttgtttttttaagaataagcatcccagccacttgaaactccctatgtaaattgtaatga 576
Query: 181 cctttatcagagcgctgatgctgaagacctgtactgaagaattcacataagtgtgctgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cctttatcagagcgctgatgctgaagacctgtactgaagaattcacataagtgtgctgcc 516
Query: 241 acttgactgttaaaaagacaatgtccttcaaaatgcaatctctatgattttcattgttta 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 acttgactggtaaaaagacaatgtccttcaaaatgcaatctctatgattttcattgttta 456
Query: 301 caaacagaatttagataggagtcatctggattgatctttaccttaccaaaaacctattgt 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 455 caaacagaatttagataggagtcatctggattgatctttaccttagcaaaaacctattgt 396
Query: 361 tggttttttttttaatggacataagttttaattatgacctaatttgaaatgaaatatcaa 420
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tg--ttgttttttaatggacataagttttaattatgacctaatttgaaatgaaatatcaa 338
Query: 421 agagctag---------ataaacagaactcaccaaataaaagggctcacaatcagatcac 471
|||||||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 337 agagctaggcaagcgaga-aaacagaactccccaaataaaagggctcacaatcagatcac 279
Query: 472 agttagtaccggcactttcaaataactgtgtctct 506
||||||||| |||||||||||||||||||||||||
Sbjct: 278 agttagtactggcactttcaaataactgtgtctct 244
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 904
Length adjustment: 10
Effective length of query: 496
Effective length of database: 894
Effective search space: 443424
Effective search space used: 443424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_m12.g1 MSMg01no117_m12.g1 CHROMAT_FILE:
MSMg01no117_m12.g1 PHD_FILE: MSMg01no117_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:26 2005
(392 letters)
>mm_chr2_77124738_77125531
Length = 794
Score = 719 bits (372), Expect = 0.0
Identities = 388/396 (97%), Gaps = 6/396 (1%)
Strand = Plus / Plus
Query: 1 tctaatggtcagaaatgactctcatgtttatctactttttttttttttttcctt----ga 56
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 201 tctaatggtcagaaatgactctcatgtttatctacttttttttttttttt--ttttctga 258
Query: 57 gcaaaacaagggcaaaccacatttggaaacaatctccacccatcagcaggcttcttccca 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gcaaaacaagggcaaaccacatttggaaacaatctccacccatcagcaggcttcttccca 318
Query: 117 catgtcagtctttccagctgccctggagaggtgcgtaaaactgtggccggcagctgaatg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 catgtcagtctttccagctgccctggagaggtgcgtaaaactgtggccggcagctgaatg 378
Query: 177 gcagcccacaggaagttccaaggcttggagtaaagtctcaggaagtgctgtcaatacaga 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gcagcccacaggaagttccaaggcttggagtaaagtctcaggaagtgctgtcaatacaga 438
Query: 237 agcaaagaattgatttggttggttggataaagtggaaaatggaaagaattgccttttgta 296
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 439 agcaaagaattgatttggttggttgggtaaagtggaaaatggaaaaaattgccttttgta 498
Query: 297 ttaatctaagtttccctctccccctgaatacaacattattatgtaacaaagggcctttaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttaatctaagtttccctctccccctgaatacaacattattatgtaacaaagggcctttaa 558
Query: 357 gcaattgctttctcttttaagttggccattcgacaa 392
||||||||||||||||||||||||||||||||||||
Sbjct: 559 gcaattgctttctcttttaagttggccattcgacaa 594
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 794
Length adjustment: 9
Effective length of query: 383
Effective length of database: 785
Effective search space: 300655
Effective search space used: 300655
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
