NCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACCTGTTGCACTACCGAATGGCAGAGAAGCACCTGAAAA
AATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTG
AGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTTTGGCGGTTC
CTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCT
GGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCC
AGATGCCCCTCCACAGAGGAATGGATACAGAAAATGTGGTACATCTACAC
AATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAG
CCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCA
CAAAGCAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAA
AACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACACATTGAACT
CAAGAAAAATGAAT

NCCATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTGAAATCCACTTTCTAGATTG
CATCTTCAGGAAGAATTGGTAGATATTAGTAGATTTCTGGCAGACACCAG
TCTTGCCAATTTTGGGGGACTTACGGTGGGATGTTCTTGAATTTGGGTCA
CAATCACTTTGGAGATCCCTTTTCTATTGAGAGCTTTTGGTGCCACTTCT
AGAAAGTTGGCATTTGTCACTGGGCTCCAACAAGGAATTAGCTCAGACAA
GAATATTAGAAACAGTGACTGTGGGGCTGAGCTAACTACTTTGCTGAACT
ACTGCCTTAGGTGATCTCTTTGCTCACTATTTTGCTTAATTATTACCTCC
TGTGATCCTTTGGCTTCCCCCCTTTGCCTGATTACTATCTTATGTGATCT
CTTTGTTTACTACTTTGCTTGATGACTTTGTCTTTGATCTAAGAACTGAC
CATGTGTTCTGAATGCACCTAGAATGATATAAAAGCAGGCTGGAGTAAAA
TAAAGCTGTTTTAGCCTCAGTGCGGTCTCCAGTTATGTTACAGTTTTGTC
TAATTTTCTTAGTCTTTTCAATCTTCATCCCTCCCTTGAGGCCCCGATGA
CTGGGCTGGCTTGGTCACTTTCCCCTCTAGCTTGCCTTTCTCTGGAACAG
CTTTCAA

Query= MSMg01no117_n05.g1 MSMg01no117_n05.g1 CHROMAT_FILE:
MSMg01no117_n05.g1 PHD_FILE: MSMg01no117_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:30 2005
         (621 letters)



>mm_chr2_7853940_7854959
          Length = 1020

 Score = 1104 bits (571), Expect = 0.0
 Identities = 614/635 (96%), Gaps = 16/635 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgaaatccactttctagattgcatcttcaggaagaattggtagatattagtagattt 60
           ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 192 acttgaaatacactttctagattgcatcttcaggaagaattggtagatatcagtagattt 251

                                                                       
Query: 61  ctggcagacaccagtcttgccaattttgggggacttacggtgggatgttcttgaatttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ctggcagacaccagtcttgccaattttgggggacttacggtgggatgttcttgaatttgg 311

                                                                       
Query: 121 gtcacaatcactttggagatcccttttctattgagagcttttggtgccacttctagaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gtcacaatcactttggagatcccttttctattgagagcttttggtgccacttctagaaag 371

                                                                       
Query: 181 ttggcatttgtcactgggctccaacaaggaattagctcagacaagaatattagaaacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttggcatttgtcactgggctccaacaaggaattagctcagacaagaatattagaaacagt 431

                                                                       
Query: 241 gactgtggggctgagctaactactttgctgaacta---------ctgccttaggtgatct 291
           |||||||||||||||||||||||||||||||||||         ||||||||||||||||
Sbjct: 432 gactgtggggctgagctaactactttgctgaactaggtgctgaactgccttaggtgatct 491

                                                                       
Query: 292 ctttgctcactattttgcttaattattacctcctgtgatcctttggcttcccccctttgc 351
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 492 ctttgctcactattttgcttaattattacctcctgtggtcctttggcttccccc-tttgc 550

                                                                       
Query: 352 ctgattactatc-ttatgtgatctctttgtttactactttgcttgatgactttgtctttg 410
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ctgattactatcgtt-tgtgatctctttgtttactactttgcttgatgactttgtctttg 609

                                                                       
Query: 411 atctaagaactgaccatgtgttctgaatgcacctagaatgatataaaagcaggctggagt 470
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttctaagaactgaccatgtgttctgaatgcacctagaatgatataaaagcaggctggagt 669

                                                                       
Query: 471 aaaataaagctgttttagcctcagtgcggtctccagttatgttacagttttgtctaattt 530
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 aaaataaagctgttttagcgtcagtgcggtctccagttatgttacagttttgtctaattt 729

                                                                       
Query: 531 tcttagtcttttcaatcttcatccctcccttgaggccccgatgactg---g-gctggctt 586
           |||||||||||||||||||||||||||||||||||||||||||||||   | ||||||||
Sbjct: 730 tcttagtcttttcaatcttcatccctcccttgaggccccgatgactgactgagctggctt 789

                                              
Query: 587 ggtcactttcccctctagcttgcctttctctggaa 621
           |||||||||||||||||||||||||||||||||||
Sbjct: 790 ggtcactttcccctctagcttgcctttctctggaa 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1020
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1010
Effective search space:   617110
Effective search space used:   617110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)