BAC Information

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BAC

Clone NameMSMg01-118F19
Chromosome2 (Build37)
Map Location 16,948,841 - 16,949,011
singlet/doubletsinglet
Overlap genenone
Upstream genePlxdc2, 4930515L03Rik, LOC383665
Downstream geneNebl, LOC100041319, LOC100041047, 1700113O17Rik, A930004D18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118F19.T7 (MSMg01no118_f19.b1)MSMg01-118F19.TJ (MSMg01no118_f19.g1)
ACCAG329255AG329256
length743717
length of high quality
(start - end)
174 (142 - 315)588 (68 - 655)
definitionCHROMAT_FILE: MSMg01no118_f19.b1 PHD_FILE: MSMg01no118_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:11 2005CHROMAT_FILE: MSMg01no118_f19.g1 PHD_FILE: MSMg01no118_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACGCGCTAGCTCAAAATTTGCGGCGCTAATACGAGTCCTTTTCCGAACCC
GCGGCGGAANNCCNAGCTTTCCATTACGAGAGAAAGCAAAAAGGGGGNAC
AAANAGNCNAAACAGGAAGNCTATATACCCACAGAGGGAGCATATATACA
TTCAGAAGAGAAATAGTCCTATAGAAATCTCATAAAGCATTTTACAGGAC
TGTATATTTATGCAACTCCTTGGGGAGTCAATTTGTGGCTTTAATATAAT
TTTCATATTTTCTAATGACTCTCTAAATTTAATGGAATATATGTACATTT
TCAAAGACCAGACACATACCCCTATTTTTTTTTTGCAAACAACNCCGCGC
AGCAAACACAAACAATTTTTTTCCCTCCCGGCGACGAAGAATTATAGACT
TCCTTACGAGCAGTTTTGCCCCCCCAAGGTTATCAAATAGATATCGCCCG
GGAGGACTGCCCACCAGCCAAATACTTTCATTATCCCATCTTATGCTGTA
CCTCCTTCCTTTATACTTCCCTCTCATTTCTCTCCCCTTTCTATCTATTC
CTTTTCCTCCCCCATTCCCCTATTCTATTGACTCCTTTTTTCCCCCCTCC
CCGCGTTGCCCCCCTTTCTTCTCTCTTTTTTCCGGTTTTCCCCTCCCCCC
CCCATTTCTTCCCTTTTTTTTTTTCTTTTGCCCCTCCCCCTATAATTTTC
TTTTACCTCTCCTTAAAACCCAATCCCCCCTTTCTCTCCTCCC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTGGGCACTGCTGGCTTCTGCAGACACTGGATA
CCTGGGTTGGTGACCTTAGCTGCCCCTGTCGTACCCCCTAACCAAGGAAG
GAGAGGTGTTTGTGTGGACCCCAGATCACCAGAAAGCCTTTGAAGGAATT
AAAAAGGCTTCACTCTTTATGTGGAAGAGAGAGTAGGAGTCAACAGAAGA
GTTCTTACTCAGACTTTGGGACCTTGAAAAAGGCCAGTGGCTTACCTATC
GAAGAAGTTAGACCCTGTTGCCAGTGGGTGGTTTTCTTGTCTGAAAGCTA
TTGCTGCCATAGCTCTGCTTGTCAAGGATGCTGATAAGCTCACACTGGGA
CAGCAAATAACTGTAGTGGCACTCCACGCTCTTGAAAGCATTATCCAACA
GTCCCCCTGACCGATGGATGACCAACGCTCGTATGACACATTATCAGAGC
TTTTTGTTGACTGAACGAGTGACCTTCGCTCCCTCTGTTGTCCTCAATTC
TGCCACCCTACTGCCCGAGACTGATAACTCTTCACCTACTCATCACTGCA
CTGACATTCTGGCAGAAGAAACTGGTACTCGAAATGACCTGAAGGATCAG
CCTTGGCCTGTGAGTCCAAGCTGGTACACGAATGGCAGTAGCTTCATGTT
GAAGGTAAGTGGAAGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_f19.b1 MSMg01no118_f19.b1 CHROMAT_FILE:
MSMg01no118_f19.b1 PHD_FILE: MSMg01no118_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:11 2005
         (174 letters)



>mm_chr2_16948641_16949214
          Length = 574

 Score =  300 bits (155), Expect = 4e-86
 Identities = 167/175 (95%), Gaps = 8/175 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatatacattcagaagagaaatagtcctatagaaatctcataaagcattttacaggact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatatacattcagaagagaaatagtcctatagaaatctcataaagcattttacaggact 260

                                                                       
Query: 61  gtatatttatgcaactccttggggagtcaatttgtggctttaatataattttcatatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 261 gtatatttatgcaactccttggggagtcaatttgtggctttaatataattttcata---- 316

                                                                  
Query: 121 ----ctaatgactctctaaatttaatggaatatatgtacattttcaaagaccaga 171
               |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gagcctaatgactctctaaatttaatggaatatatgtacattttcaaagaccaga 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)