BAC Information

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BAC

Clone NameMSMg01-118G11
Chromosome2 (Build37)
Map Location 32,696,190 - 32,696,616
singlet/doubletsinglet
Overlap geneStxbp1
Upstream geneFibcd1, Lamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik
Downstream gene9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118G11.T7 (MSMg01no118_g11.b1)MSMg01-118G11.TJ (MSMg01no118_g11.g1)
ACCAG329286AG329287
length702706
length of high quality
(start - end)
231 (326 - 556)427 (74 - 500)
definitionCHROMAT_FILE: MSMg01no118_g11.b1 PHD_FILE: MSMg01no118_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:14 2005CHROMAT_FILE: MSMg01no118_g11.g1 PHD_FILE: MSMg01no118_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTC
TTGCTGTGGCACTCCCATGTAGATCAGGCTGGCCTTGAACTCACAGAGAT
CCACCTGTGTCAGCTTCATGAGCACTGGGACTAAAGGCATGTACCACCAT
GCCCAGCTTCTATATGGGTCCTAGGGATTTGAACTCAGGTTGTCATACTT
GTGTGGCTCACATTTTTTCAAAGTCATCTCCCTAACCCTTTATTTACCTA
CTTTTCTCCAGTCCTCTTGCTGCGTATAGGGAGGGTCCTTGTGTTACTGA
TGTGGGTGAAGGAGCTCATAGAGGTCCTAATGACTTGCCCAAGGTCACAC
AGCTAGAATGTGGAAGACGGGCTTGAGCTCAGCACTGTGACTGCAGAGCT
GCATGTCGCTGCCCTTCCGGGAGCAGAGGAATGAGGAGGGGGTGTGGAGT
GATAGCTCCTCTTGCAGAAGATGAGTTCCGTTTCCAGCACCCACTTTGAG
CAGATCACAACCTGTAACTACAACCCCAGGTGATTTGATGTCCTCTTCTG
GCTTCCAAGGGTATCCACGCTCAGCATGTATGTACCCTGCTCCCACACAC
ATACACATAATTGACGAATAATAACAAAAAACAACTTATATGGTCTGGAG
AGATGTCTCAGCGCGTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAAT
TC
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGATCAGGCTGGCCTCGAAC
TCACAGAGGCATGAACTACTATGCCCATTTTGTTTTGTTTTGTTTTTGGT
GCTTATTTCTAGATATAGTTCTGTTTTGAACTGGCTGTCACCTTATAATA
ATGTGATTTACAATTTAAGTTGGGGCAAGTTTCCCTAAGTAGTGGTTTAG
GGACCAAGTAGCATCCCCGCGTCTTCATCAGTTGTGAGAGGACTTGCATC
TTCCCTGCATCCAACAAGGGCTTATTGTGTTGGCTGTACATTGAACGTTT
TTTTTTACTAATTAATTTATTTTTTCGGCACACAGCACCTCTGAGGCAAA
CAGGTGCTTGGCAACTGAAGAGCTCAACAGCAGCAAGAGGCTATGGGAAG
CTGACTTCCTTGGTCCAACAGAAGAAACTGGATCTAGGCTAGAAAGACAG
CTCAGCAATTAAGAGCACGCAGTGCGCTGAGCCCCTTTCAGTCTCCAGCA
TCCACATCAGAGTTTTCTTTAGTGAATTGGTCAGGCCAACTTTTATAGTT
ACCTCTGGTAGTCCAGCAGTCCTAAATCGCGCACTCTGGTCCCAAGCTTG
ACCTAGGATAACTGTCTCACGAATGCCAGCTTTCAGGCTGAACAGAAGGA
CACAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_g11.g1 MSMg01no118_g11.g1 CHROMAT_FILE:
MSMg01no118_g11.g1 PHD_FILE: MSMg01no118_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:14 2005
         (427 letters)



>mm_chr2_32696110_32696936
          Length = 827

 Score =  754 bits (390), Expect = 0.0
 Identities = 417/428 (97%), Gaps = 5/428 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagatcaggctggcctcgaactcacagaggcatgaactactatgcccattttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 actctgtagatcaggctggcctcgaactcacagaggcatgaactactatgcccattttgt 448

                                                                       
Query: 61  tttgttttgtttttggtgcttatttctagatatagttctgttttgaactggctgtcacct 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 447 tttgttttgtttttggtgtttatttctagatatagttctgttttgaactggttgtcacct 388

                                                                       
Query: 121 tataataatgtgatttacaatttaagttggggcaagtttccctaagtagtggtttaggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tataataatgtgatttacaatttaagttggggcaagtttccctaagtagtggtttaggga 328

                                                                       
Query: 181 ccaagtagcatccccgcgtcttcatcagttgtgagaggacttgcatcttccctgcatcca 240
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 327 ccaagtagcatccccgtgtcttcatcagttgtgagaggacttgcatcttccctgtatcca 268

                                                                       
Query: 241 acaagggcttattgtgttggctgtacattgaacgttttttttt----actaattaattta 296
           |||||||||||||||||||||||||||||||| ||||||||||    | |||||||||||
Sbjct: 267 acaagggcttattgtgttggctgtacattgaatgttttttttttttaattaattaattta 208

                                                                       
Query: 297 ttttttcggcacacagcacctctgaggcaaacaggtgcttggcaactgaagagctcaaca 356
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tttttt-ggcacacagcacctctgaggcaaacaggtgcttggcaactgaagagctcaaca 149

                                                                       
Query: 357 gcagcaagaggctatgggaagctgacttccttggtccaacagaagaaactggatctaggc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gcagcaagaggctatgggaagctgacttccttggtccaacagaagaaactggatctaggc 89

                   
Query: 417 tagaaaga 424
           ||||||||
Sbjct: 88  tagaaaga 81


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)