Query= MSMg01no118_k22.b1 MSMg01no118_k22.b1 CHROMAT_FILE:
MSMg01no118_k22.b1 PHD_FILE: MSMg01no118_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:36 2005
(605 letters)
>mm_chr2_133279594_133280598
Length = 1005
Score = 996 bits (515), Expect = 0.0
Identities = 527/531 (99%)
Strand = Plus / Minus
Query: 1 acaagccctgtaccactgagccacaccccccgctctgaagtaaagctttgaatcatatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 acaagccctgtaccactgagccacaccccccgctctgaagtaaagctttgaatcatatac 472
Query: 61 tactattgattatatatatttcaaaaagagttgtaaaattatctccggctcaacatgttc 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 471 tactattgattatatatatttcataaagagttgtaaaattatctccggctcaacatgttc 412
Query: 121 atctggcaggtaaaatcactcctgaagcaagagacagaaaataattatcctccattggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 atctggcaggtaaaatcactcctgaagcaagagacagaaaataattatcctccattggaa 352
Query: 181 tccagctggatttgtcactgtttggaccaagacgctaaggctggattaacaccttacacc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tccagctggatttgtcactgtttggaccaagacgctaaggctggattaacaccttacact 292
Query: 241 ttctaagatgagatcttaaaacgccgtgaagcatcctctttgtttgagggaacattcatg 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ttctaagatgagatcttaaaaagccgtgaagcatcctctttgtttgagggaacattcatg 232
Query: 301 catgaagctctgaggcaccacaggaaacatctatactggatggatttaattgccaacttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 catgaagctctgaggcaccacaggaaacatctatactggatggatttaattgccaacttg 172
Query: 361 acacaatatagtgtcactgggggaagaaagctcagtttaacaattgcctcaatcagattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 acacaatatagtgtcactgggggaagaaagctcagtttaacaattgcctcaatcagattg 112
Query: 421 atttgtgggcatgtctgtatacattttctaggttactgcttgatacagaatggcccatcc 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 111 atttgtgggcatgtctgtatacattttctaggttgctgcttgatacagaatggcccatcc 52
Query: 481 catggtgattattgccatcccttgacaggtagtcctgggctatataagaaa 531
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 catggtgattattgccatcccttgacaggtagtcctgggctatataagaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_k22.g1 MSMg01no118_k22.g1 CHROMAT_FILE:
MSMg01no118_k22.g1 PHD_FILE: MSMg01no118_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:36 2005
(579 letters)
>mm_chr2_133207416_133208400
Length = 985
Score = 1062 bits (549), Expect = 0.0
Identities = 576/591 (97%), Gaps = 12/591 (2%)
Strand = Plus / Plus
Query: 1 tcatttaggaaaacatggtgcatgtaaggagtcaaagcaaatggaacactgggtctgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatttaggaaaacatggtgcatgtaaggagtcaaagcaaatggaacactgggtctgatg 260
Query: 61 acccaactcaccttaaactgcaagaagtcgagtcaactcccacatcccaggtggaggaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acccaactcaccttaaactgcaagaagtcgagtcaactcccacatcccaggtggaggaaa 320
Query: 121 caggagccctgataaggaaggaaacagaagcccagataaggctccttgaatttctggtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggagccctgataaggaaggaaacagaagcccagataaggctccttgaatttctggtct 380
Query: 181 gtgtctgactggtgtgaagtaaggaatttcaggatccctggtatcagaatcaaccccccc 240
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 381 gtgtctgactggtgtgaagtaaggaatttcgggatccctggtattagaatcaaccccccc 440
Query: 241 ccc--tttctgtaaccacgctggcaggattctgaaatggggagagtgagtgcaccaaggg 298
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccccttttctgtaaccacgctggcaggattctgaaatggggagagtgagtgcaccaaggg 500
Query: 299 tatggagaaatttttctagggtgtctgaagctgtccaggtgtgggtgggtggcgtcacat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatggagaaatttttctagggtgtctgaagctgtccaggtgtgggtgggtggcgtcacat 560
Query: 359 tcaaatttacaaacctttcatggtgcctaatggcttgtaagatcaagttcagatttgctc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaaatttacaaacctttcatggtgcctaatggcttgtaagatcaagttcagatttgctc 620
Query: 419 acctagataaaggagtttcatcatttgccctctgctgacttctccaagtctgagagcatg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 acctagataaaggagtttcatcatttgccctctgctgacttctccaagtctgagaacatg 680
Query: 479 ctgacttcttggtatatccttgaagaggcccttgacagcactca----tcctggataatg 534
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 ctgacttcttggtatatccttgaagaggcccttgacagcactcactcatcctggataatg 740
Query: 535 ttgctccaagccttttttcctttgcctggtgaaca------gcatcttctc 579
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 741 ttgctccaagccttttttcctttgcctggtgaacattcacagcatcttctc 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 985
Length adjustment: 10
Effective length of query: 569
Effective length of database: 975
Effective search space: 554775
Effective search space used: 554775
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
