BAC Information

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BAC

Clone NameMSMg01-118P18
Chromosome2 (Build37)
Map Location 143,679,144 - 143,767,141
singlet/doubletdoublet
Overlap geneBfsp1, LOC100043799, LOC100043534, Dstn
Upstream geneKif16b, Snrpb2, Otor, LOC668915, LOC668916, Pcsk2
Downstream geneRrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118P18.T7 (MSMg01no118_p18.b1)MSMg01-118P18.TJ (MSMg01no118_p18.g1)
ACCAG329717AG329718
length722719
length of high quality
(start - end)		650 (43 - 692)622 (73 - 694)
definitionCHROMAT_FILE: MSMg01no118_p18.b1 PHD_FILE: MSMg01no118_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:00 2005CHROMAT_FILE: MSMg01no118_p18.g1 PHD_FILE: MSMg01no118_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,766,496 - 143,767,141)(143,679,144 - 143,679,765)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGTAGCCGCGGAAT
TCCAGGACAGCCACGACTATACAAAGAAACCTAGCCTCAAAAAAAACTAA
ATAAATAAATAAACAAATAAAAATGCAAGCATGAACTTAAACACTGTGTT
GCAGAAAACCAAGTTCTGTGGTTGCATTTCACACCACACATAAGACTGGA
CACGTAAGCTGTGGCACTGGTGGGCCTTAGGACAATTCTATCGGCATACT
GTAGAACCAGCTCATCCAAGGGCTTAAACGCAGCAGGTTCTATGCACAGA
ATGTTTTAAACAGCTGAACAGTTAGTCTACCATTTGACGATCACTTTCCA
AACTCTTCTCAAAGCACAAAAGGTCAGTTTTTATACAACTTTGGACTAAT
TTGAGAAAGCCACCGACGAGTCCACAAGACAGGTGACATGGTGACTATTA
CTTAATATCCCTAAATCAAGTCTTATGTAGCAATTCCCCTTAAGTCTTAG
GTTTCATCAAAGTACTGAGCTGAGAAGTCACTGAGCTTCAAGTTATCAGT
TGATATTTGTGAGCTTACTCTAGGGCCCCCAAATCAACCCAAAGAACAAA
GAACCCACTGAAGGGGACTGGAAAAGGAAGCAGGAATGCCGACTATTTAA
CTCATTAGAACAAGCTGGGGTGAACCAGTTCTACTCCAGGAATGCAAAAA
CCAGTCACAGAAAACACACAAA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACTCTTCCAACCTCCTTCTCAGCTGAT
GACACCCATCCACAGACAGAGAACAATGGGATACAGAGAGCTAGCCGGGC
AGACAGATCACCATTGTGAACAAAGCTCCATCCACCTAGAAACCCTGGAG
ACTTGTGGAACTCTCTCCTCTGAGGGAGGAACAACTGGGGAACTTATCCA
CACACTGCTGACCCTCAATGAGTAAGGTTCACTTCCTGGAGTGTGCACAC
CCATGCTTCTGGGCTGAGTGAGTCACGTTCCCACAGCAAGAGGCGCAGGA
AGCCTCCTTGTTCCCTGCACATGTGCTAACCGGGTCAGGTGTCCCAGGAT
AAGGATCCACTATCAAGACCTAAAGACTGCCTCTCACCTGCAGCACATGA
CTTTGTGTCTGGCTTCTGAGGGACTGTTTCTCTGATAGTCATTAGGAAGC
AGATGAGCCATGAATACAAAACACTATGGCCTGTGCCTGCCATGCACAGG
ATGCAGGGTTCAGCAGCTGCTTAAGCTCATGGGAGTTTGTCACTGGAGGA
AAAAGGAGCTGGGCTGGTTTCTTTCTAAGAGTGACATCTGCCCCATCAAT
ATAACCAGAGGCTGATCTGGAACTCCCACAAGCTGATCCAAGGACCTTCT
CAATCCAGTGTTTACATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_p18.b1 MSMg01no118_p18.b1 CHROMAT_FILE:
MSMg01no118_p18.b1 PHD_FILE: MSMg01no118_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:00 2005
         (650 letters)



>mm_chr2_143766217_143767266
          Length = 1050

 Score = 1218 bits (630), Expect = 0.0
 Identities = 642/646 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggacagccacgactatacaaagaaacctagcctcaaaaaaaactaaataaat 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 gaattccaggacagccaggactatacaaagaaacctagcctcaaaaaaaactaaataaat 866

                                                                       
Query: 65  aaataaacaaataaaaatgcaagcatgaacttaaacactgtgttgcagaaaaccaagttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 aaataaacaaataaaaatgcaagcatgaacttaaacactgtgttgcagaaaaccaagttc 806

                                                                       
Query: 125 tgtggttgcatttcacaccacacataagactggacacgtaagctgtggcactggtgggcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgtggttgcatttcacaccacacataagactggacacgtaagctgtggcactggtgggcc 746

                                                                       
Query: 185 ttaggacaattctatcggcatactgtagaaccagctcatccaagggcttaaacgcagcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttaggacaattctatcggcatactgtagaaccagctcatccaagggcttaaacgcagcag 686

                                                                       
Query: 245 gttctatgcacagaatgttttaaacagctgaacagttagtctaccatttgacgatcactt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gttctatgcacagaatgttttaaacagctgaacagttagtctaccatttgacgatcactt 626

                                                                       
Query: 305 tccaaactcttctcaaagcacaaaaggtcagtttttatacaactttggactaatttgaga 364
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 625 tccaaactcttctcaaagcacaaaagatcagtttttatacaactttggactaatttgaga 566

                                                                       
Query: 365 aagccaccgacgagtccacaagacaggtgacatggtgactattacttaatatccctaaat 424
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagccaccgatgagtccacaagacaggtgacatggtgactattacttaatatccctaaat 506

                                                                       
Query: 425 caagtcttatgtagcaattccccttaagtcttaggtttcatcaaagtactgagctgagaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caagtcttatgtagcaattccccttaagtcttaggtttcatcaaagtactgagctgagaa 446

                                                                       
Query: 485 gtcactgagcttcaagttatcagttgatatttgtgagcttactctagggcccccaaatca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtcactgagcttcaagttatcagttgatatttgtgagcttactctagggcccccaaatca 386

                                                                       
Query: 545 acccaaagaacaaagaacccactgaaggggactggaaaaggaagcaggaatgccgactat 604
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 385 acccaaagaacaaagaacccactgaaggggactgggaaaggaagcaggaatgccgactat 326

                                                         
Query: 605 ttaactcattagaacaagctggggtgaaccagttctactccaggaa 650
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaactcattagaacaagctggggtgaaccagttctactccaggaa 280


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no118_p18.g1 MSMg01no118_p18.g1 CHROMAT_FILE:
MSMg01no118_p18.g1 PHD_FILE: MSMg01no118_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:00 2005
         (622 letters)



>mm_chr2_143678944_143679965
          Length = 1022

 Score = 1156 bits (598), Expect = 0.0
 Identities = 616/622 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactcttccaacctccttctcagctgatgacacccatccacagacagagaacaatgggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactcttccaacctccttctcagctgatgacacccatccacagacagagaacaatgggat 260

                                                                       
Query: 61  acagagagctagccgggcagacagatcaccattgtgaacaaagctccatccacctagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagagagctagccgggcagacagatcaccattgtgaacaaagctccatccacctagaaa 320

                                                                       
Query: 121 ccctggagacttgtggaactctctcctctgagggaggaacaactggggaacttatccaca 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatggagacttgtggaactctctcctctgagggaggaacaactggggaacttatccaca 380

                                                                       
Query: 181 cactgctgaccctcaatgagtaaggttcacttcctggagtgtgcacacccatgcttctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactgctgaccctcaatgagtaaggttcacttcctggagtgtgcacacccatgcttctgg 440

                                                                       
Query: 241 gctgagtgagtcacgttcccacagcaagaggcgcaggaagcctccttgttccctgcacat 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 gctgagtgagtcacgttcccacagcaagaggtgcaggaagcctccttgttccctgcacat 500

                                                                       
Query: 301 gtgctaaccgggtcaggtgtcccaggataaggatccactatcaagacctaaagactgcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 gtgctaaccgggtcaggtgtcccaggataaggatccactatcaagacctaaagaccgcct 560

                                                                       
Query: 361 ctcacctgcagcacatgactttgtgtctggcttctgagggactgtttctctgatagtcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcacctgcagcacatgactttgtgtctggcttctgagggactgtttctctgatagtcat 620

                                                                       
Query: 421 taggaagcagatgagccatgaatacaaaacactatggcctgtgcctgccatgcacaggat 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 taggaagcagatgagccatgaatacaaaacactctggcctgtgcctgccatgcacaggat 680

                                                                       
Query: 481 gcagggttcagcagctgcttaagctcatgggagtttgtcactggaggaaaaaggagctgg 540
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcagggttctgcagctgcttaagctcatgggagtttgtcactggaggaaaaaggagctgg 740

                                                                       
Query: 541 gctggtttctttctaagagtgacatctgccccatcaatataaccagaggctgatctggaa 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 741 gctggtttctttctaagagtgacatctgccccatcaatataaccagaggctgatctggga 800

                                 
Query: 601 ctcccacaagctgatccaagga 622
           ||||||||||||||||||||||
Sbjct: 801 ctcccacaagctgatccaagga 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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