BAC Information

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BAC

Clone NameMSMg01-119H04
Chromosome2 (Build37)
Map Location 48,623,681 - 48,624,022
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383691, LOC100041457
Downstream geneLOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119H04.T7 (MSMg01no119_h04.b1)MSMg01-119H04.TJ (MSMg01no119_h04.g1)
ACCAG330066AG330067
length713717
length of high quality
(start - end)
435 (46 - 480)339 (76 - 414)
definitionCHROMAT_FILE: MSMg01no119_h04.b1 PHD_FILE: MSMg01no119_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:35 2005CHROMAT_FILE: MSMg01no119_h04.g1 PHD_FILE: MSMg01no119_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAGATCCGCGG
AATTCTTTGTTTACTCTCTGAGCCCTATTTTTTAATGAGGTTATTTGATT
TTCTGGAGTACACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCA
CTATCTGATTTAGTATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCTTATTGACAGTGTCTTTTGCCTTGTAGAAGCTCTGCAATTTTA
TGAGGTCATTTGTAGATTCTCGATATTACAGCACAAGCCATTGCTGTTCT
ATTCAGGAACTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCTACTT
TCTCCTCTTTAAGTTTCAGCGTCTCTGGTTTTATGTGGAGATCCTTAATC
CACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCGATTCGCAT
TCTTCTACATGATAACAACCAGTTGTGCCAGCACCTATTGTTGAAAATGC
TGTCTTTTTTCCTCCGGATGGCTTTTGCTCCCTTGTCGAATACCATGTGA
CCATAGGTGTGTGGTTTCATTTCTGTGTCTTCAATTCTATTCCCTTGGTC
TACCTGCCTTGTCCATACATCAGTACCTTGTAGTTTTTCACACACTTGCT
TTATACCGCAGTTTTCAGCCCCGCTTGTTGTATTCTTCCCAAGCTTTTTC
CATCATCCTTCAA
CCCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTCTCTATGTCCTGACGAGAAGCA
GCAGAATGAATCTATACAGAGTCAGCTATTTTTTTTAAAGACAAGACACA
GTTTTTTTTCCCTTAAAGTTATATTTATGTACTCTTTGAAGATAACTACC
ATGTTTTATGTTCTTTGAATTTATAATTCAGCTACTCGGGATTATACTGA
CGCTTGATACAATGGGCTGTTGGTGGATGAATTAATCTGGTGAAGGATAG
TCTTAAACTGTGGTGCATACCCTTCACTCCAATGTAACAATCACAGAAGA
CATAGTTGCGTCTTAAAATTTTTAGACACTAAGTTGGCACTAACTCCATT
TTTACACTTAAGCCTTTCTGCATCAGTCAGCTATTCCTGCTCATTCCAAG
AAATATTATCACCCAAGAACCTATTACAATCTTTGATAATCCACGCAGTA
CTTCATTTCTCCCCGTATCCATCTAAATAGGGCTTCCTTTGATCTGTACT
CACCCTGTCATGCGACAATGCGTAAGCGACATTGTTTTCTTTTGGAATAT
CCTTTTCCTTGCGACAAACGCCCCACATTTTGATCGTGAAAAATCCCATT
ACGCCATGTCTTCTGCCATGTCCTCGAACCATCTCCCCACCATTTTATAC
TTATTATTGTCCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_h04.g1 MSMg01no119_h04.g1 CHROMAT_FILE:
MSMg01no119_h04.g1 PHD_FILE: MSMg01no119_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:35 2005
         (339 letters)



>mm_chr2_48623481_48624222
          Length = 742

 Score =  603 bits (312), Expect = e-177
 Identities = 334/342 (97%), Gaps = 3/342 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctctatgtcctgacgagaagcagcagaatgaatctatacagagtcagcta--ttttt 58
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 201 tctctctatgtcctgacgagaagcagcagaatgaatctatacagagtcagctattttttt 260

                                                                       
Query: 59  tttaaagacaagacacag-ttttttttcccttaaagttatatttatgtactctttgaaga 117
           |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tttaaagacaagacacagtttttttttcccttaaggttatatttatgtactctttgaaga 320

                                                                       
Query: 118 taactaccatgttttatgttctttgaatttataattcagctactcgggattatactgacg 177
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 taactaccatgttttatgttctttgaatttctaattcagctactcgggattatactgacg 380

                                                                       
Query: 178 cttgatacaatgggctgttggtggatgaattaatctggtgaaggatagtcttaaactgtg 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgatacaatgggctgttggtggatgaattaatctggtgaaggatagtcttaaactgtg 440

                                                                       
Query: 238 gtgcatacccttcactccaatgtaacaatcacagaagacatagttgcgtcttaaaatttt 297
           ||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 gtgcaaacccatcactccaatgtaacaatcacagaagacatagttgtgtcttaaaatttt 500

                                                     
Query: 298 tagacactaagttggcactaactccatttttacacttaagcc 339
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagacactaagttggcactaactccatttttacacttaagcc 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 742
Length adjustment: 9
Effective length of query: 330
Effective length of database: 733
Effective search space:   241890
Effective search space used:   241890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)