BAC Information

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BAC

Clone NameMSMg01-119L14
Chromosome2 (Build37)
Map Location 106,284,248 - 106,402,537
singlet/doubletdoublet
Overlap gene9330126M15
Upstream genePax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5
Downstream geneC130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119L14.T7 (MSMg01no119_l14.b1)MSMg01-119L14.TJ (MSMg01no119_l14.g1)
ACCAG330271AG330272
length709703
length of high quality
(start - end)		661 (46 - 706)625 (68 - 692)
definitionCHROMAT_FILE: MSMg01no119_l14.b1 PHD_FILE: MSMg01no119_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:57 2005CHROMAT_FILE: MSMg01no119_l14.g1 PHD_FILE: MSMg01no119_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,401,880 - 106,402,537)(106,284,248 - 106,284,869)
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGC
GGAATTCAAAAATAACCCTGTAGTCCATTTTTCCTGAGCAATATCTCAAT
GTTTCTACCATGGTTGCCCATATACAAACAAGATGCACCATGTCATCCTT
CCATTGCTGTATATGAATGTCTTACAATGAACTTCAAGCCCAATTCTTGC
CCTGTCACTGTCTCTAGCAGTTGATAGAAATTAGAAAATACCAATCTTGC
AATTTTACTGGTAAGAACACTAAAGTTCAAAGCAAAGAGTTAGAAAGGTT
CTACTACTGAAATTAATATGTCTGTGTTTCCCACTACAGCTCTTTGCTGT
GTTGAGACAGGGTCACACTATTTATTTCTGGGTCCCAGGGGACCTTGGAC
AGGGCTCTTGCCTAGCTCTAGTATCTTTATCCAGGAAGTGAGGATCCTGG
ATACTCCTTTATCCTTAATGTTTCATGCTGATGCTTCCCTGGAGGATCAG
GGCTAGACCCAGAGCCAGTGGCTGTCTGACCCTTCTTGGTCTGTTCATTG
TCATTCTTTCCATTTTCACATCACCACCTCAGACTCTGTGACAAATCTTC
TTTGTAATTTCCCTAGCAGGACTGCATAACAGTTCTAATCACCAGAGGAC
AGGCTGCTGAGCAGTCTGTCTGCGGTTGGGGTCGGGGTGGGACACACACC
TTGTCTTCT

NCCATGAAGTGGGAGGCTGGCGGCGCCTGTTCTCAAXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCATCTAGAAGACATATATAGTCCACCACACAAG
GACCTAGAAAACACATATCTTATCCAAGCACACATGGAACCCAGATCACA
CTTTTGGCCATAAAAGAAGTCTTAACAAATTTCAAAGACCATCATATGAC
CACATGCCCAACAACCACACAATATGTTAGAAATCACTAACAAAAGAAAG
ATTAAAATCACCTCATACAGTCAAGAAAGAAAATCCACCTGGGTAAGGGA
GCAATTTTCACTATAAATACAAAAATACTTACAATTGAAAAATAATAGAA
AAAGCAATAATATCCTGAAGGAAATGTAATGCCATATATATTTCTTCTAC
AAAAGGGAAATAATACAGAAAAGTAAGAACTTGAAGTAAATAAATCAAAA
TAAGATGAAATTTAGGAAAGAAAATATTAACAATAGGAGAAGAAATTACA
AGAAAATATAGGAATAGATTGATATATTTGGTGACATTAAAACTAAGAAA
CTGTATGTACCAAATTCTATCATAGAGTTAAAAAAATAAAAACAATAAGA
CCGCAACTCACGCACACTAGAAATGACATCTTAAGATATACTAGCTATAA
GGAATAATGTTCAAAACATCAGTAAAGAAAAACCCAACATAAAAGCAGCA
AAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_l14.b1 MSMg01no119_l14.b1 CHROMAT_FILE:
MSMg01no119_l14.b1 PHD_FILE: MSMg01no119_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:57 2005
         (661 letters)



>mm_chr2_106401674_106402737
          Length = 1064

 Score = 1226 bits (634), Expect = 0.0
 Identities = 651/658 (98%), Gaps = 3/658 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcaaaaataaccctgtagtccatttttcctgagcaatatctcaatgtttctaccat 66
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gaattcaaaaataactctgtagtccatttttcctgagcaatatctcaatgtttctaccat 805

                                                                       
Query: 67  ggttgcccatatacaaacaagatgcaccatgtcatccttccattgctgtatatgaatgtc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ggttgcccatatacaaacaagatgcaccatgtcatccttccattgctgtatatgaatgtc 745

                                                                       
Query: 127 ttacaatgaacttcaagcccaattcttgccctgtcactgtctctagcagttgatagaaat 186
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttgcaatgaacttcaagcccaattcttgccctgtcactgtctctagcagttgatagaaat 685

                                                                       
Query: 187 tagaaaataccaatcttgcaattttactggtaagaacactaaagttcaaagcaaagagtt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tagaaaataccaatcttgcaattttactggtaagaacactaaagttcaaagcaaagagtt 625

                                                                       
Query: 247 agaaaggttctactactgaaattaatatgtctgtgtttcccactacagctctttgctgtg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agaaaggttctactactgaaattaatatgtctgtgtttcccactacagctctttgctgtg 565

                                                                       
Query: 307 ttgagacagggtcacactatttatttctgggtcccaggggaccttggacagggctcttgc 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttgagacagggtcacactatttatttctgggtcccaggggaccttggacagggctcttgc 505

                                                                       
Query: 367 ctagctctagtatctttatccaggaagtgaggatcctggatactcctttatccttaatgt 426
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 504 ctagctctagtatctttatccaggaagtgaggaacctggatactcctttatccttaatgt 445

                                                                       
Query: 427 ttcatgctgatgcttccctggaggatcagggctagacccagagccagtggctgtctgacc 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttcatgctgatgcttccctggaggatcagggctagacccagagccagtggctgtctgacc 385

                                                                       
Query: 487 cttcttggtctgttcattgtcattctttccattttcacatcaccacctcagactctgtga 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttcttggtctgttcattgtcattctttccattttcacatcaccacctcagactctgtga 325

                                                                       
Query: 547 caaatcttctttgtaatttccctagcaggactgcataacagttctaatcaccagaggaca 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caaatcttctttgtaatttccctagcaggactgcataacagttctaatcaccagaggaca 265

                                                                     
Query: 607 ggctgctgagcagtct---gtctgcggttggggtcggggtgggacacacaccttgtct 661
           ||||||||||||||||   |||||||||||||||||||||||| ||||||||||||||
Sbjct: 264 ggctgctgagcagtctgaggtctgcggttggggtcggggtggggcacacaccttgtct 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1064
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1054
Effective search space:   686154
Effective search space used:   686154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no119_l14.g1 MSMg01no119_l14.g1 CHROMAT_FILE:
MSMg01no119_l14.g1 PHD_FILE: MSMg01no119_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:57 2005
         (625 letters)



>mm_chr2_106284048_106285072
          Length = 1025

 Score = 1187 bits (614), Expect = 0.0
 Identities = 620/622 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctagaagacatatatagtccaccacacaaggacctagaaaacacatatcttatccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catctagaagacatatatagtccaccacacaaggacctagaaaacacatatcttatccaa 260

                                                                       
Query: 61  gcacacatggaacccagatcacacttttggccataaaagaagtcttaacaaatttcaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcacacatggaacccagatcacacttttggccataaaagaagtcttaacaaatttcaaag 320

                                                                       
Query: 121 accatcatatgaccacatgcccaacaaccacacaatatgttagaaatcactaacaaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accatcatatgaccacatgcccaacaaccacacaatatgttagaaatcactaacaaaaga 380

                                                                       
Query: 181 aagattaaaatcacctcatacagtcaagaaagaaaatccacctgggtaagggagcaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagattaaaatcacctcatacagtcaagaaagaaaatccacctgggtaagggagcaattt 440

                                                                       
Query: 241 tcactataaatacaaaaatacttacaattgaaaaataatagaaaaagcaataatatcctg 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcactagaaatacaaaaatacttacaattgaaaaataatagaaaaagcaataatatcctg 500

                                                                       
Query: 301 aaggaaatgtaatgccatatatatttcttctacaaaagggaaataatacagaaaagtaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggaaatgtaatgccatatatatttcttctacaaaagggaaataatacagaaaagtaag 560

                                                                       
Query: 361 aacttgaagtaaataaatcaaaataagatgaaatttaggaaagaaaatattaacaatagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacttgaagtaaataaatcaaaataagatgaaatttaggaaagaaaatattaacaatagg 620

                                                                       
Query: 421 agaagaaattacaagaaaatataggaatagattgatatatttggtgacattaaaactaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaagaaattacaagaaaatataggaatagattgatatatttggtgacattaaaactaag 680

                                                                       
Query: 481 aaactgtatgtaccaaattctatcatagagttaaaaaaataaaaacaataagaccgcaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaactgtatgtaccaaattctatcatagagttaaaaaaataaaaacaataagaccgcaac 740

                                                                       
Query: 541 tcacgcacactagaaatgacatcttaagatatactagctataaggaataatgttcaaaac 600
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 741 tcacgcacactagaaatgacatcttaagatatactagctataagaaataatgttcaaaac 800

                                 
Query: 601 atcagtaaagaaaaacccaaca 622
           ||||||||||||||||||||||
Sbjct: 801 atcagtaaagaaaaacccaaca 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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