BAC Information

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BAC

Clone NameMSMg01-120D10
Chromosome2 (Build37)
Map Location 141,638,275 - 141,638,511
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC668913, LOC668914, Kif16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120D10.T7 (MSMg01no120_d10.b1)MSMg01-120D10.TJ (MSMg01no120_d10.g1)
ACCAG330636AG330637
length712703
length of high quality
(start - end)
237 (72 - 308)---
definitionCHROMAT_FILE: MSMg01no120_d10.b1 PHD_FILE: MSMg01no120_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:35 2005CHROMAT_FILE: MSMg01no120_d10.g1 PHD_FILE: MSMg01no120_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXGATCCAAAAGAGGATCCGCG
GAATTCTCTATTCCCCACAGTCTCTAAGCTTATTTTTTGATTTCGTATCA
TTTTCTCATGCACATCTGGGGCATTGTAGAAAATTTAGGTCATTTTGCTT
CAGTAACATGCTAGTCATGGCAACATTAAATATATCTTTGCTGGTTACCT
TTTAAGAACTTCCTGTTTTAATATATACAAAAGTGTGTCAGCAAGTTAAT
TTGGACGCAGCTCATTTTACTGAAATAATAAACTATAAGTGACTATAGAT
AAAAGCTATGCAAACTGATTATTCAGTTGCAGTTTGATGCAGGGTTTGCT
CTGATTATCGAAACACCTACGCTAAAGATGTGGGAAAGAATGTTGCTTCC
AAAACCCTTGTCTTCCTGATGCAGTGCTGTTTTGACATCTTGACTCTTTC
AGTGAGATATTCTATTCTTCATTCACTCTGACAATATTTATTGAAATCTA
CTAAGCACATTTCTATCTGGGAAAAATCACTGAAAGACAAACCTATCTTC
CCTGTGTTTCGAAAGTTATATCCTGCCATAAGTGAAGCACATTAACCATA
TATAGACATCATATTGTCCAAAGAGTTCCTTATGAAATCATACGCTCATC
CCTACCTAACGGAATCATGAGGAGAATGGTCTTTTAGAACCTATTAAAAC
TCTTCTGATGCC
GATGTTCCACACTGTAGGTGACTATAGAATGTCCGCGGATTCTTTATCGA
CAGTGATTTTGTTTTATTCAGACACAAGTGAGTAGTGATGTGCTCAGATA
GGCAACCTGTCCTGTCTTTTATGAAGAAATTTTAATTTTATCTATAAATA
ACTGAGACCAGAAGAATTTGAGCTCCACAACTGAAGATGAGCCAGAACCA
AAGTGANGTTCAGCTAGGGCCTGACTATCCTGTGCTCCTCTTTCAACTCT
CTGTCCAAGTTCGGACCTTCCAACTCAGTACGGGGCTTTCTACCAAGGCT
GACACAGAATCTCGGAAGAGAATAAAGGGGTACGTCGCTGGCTTCGAGGC
GAGAACTTAGTTGACGAGAATCCACAACGCGTAAGAAAAAGACCGCTGTC
TCGGTTGTGTTCTGTGCGTGGCCGAAGGGCACGCCCTCTAGATTTGGAGA
GGATGGCTTTCGGTGAGAATTAGGCTCTCTTGGGGAATTTATGTCGTCGC
GCCCTATGAGGAAATTTACAGGGGGCTGAAGGGCTTAGCGGGGGGCGGGC
AAAGGGGAAGTGTGGGCGTTCCCCTCGGTCCTGGGGGGCGCGGAATGGGG
GAAGGCCNACTAGGGGGCGTGAGAGGGTGTCTGCCGGTTGGGGGGGGTAT
GGGGCGTGGTGGGGGGGGAGGCGGGGGCGATGGGAGCCGTGTTTGAGGCC
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_d10.b1 MSMg01no120_d10.b1 CHROMAT_FILE:
MSMg01no120_d10.b1 PHD_FILE: MSMg01no120_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:35 2005
         (237 letters)



>mm_chr2_141638075_141638711
          Length = 637

 Score =  435 bits (225), Expect = e-126
 Identities = 234/237 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctaagcttattttttgatttcgtatcattttctcatgcacatctggggcattgtagaa 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 ctctaagcttattttttgatttcgtatcattttctcatgtacatctggggcattgtagaa 260

                                                                       
Query: 61  aatttaggtcattttgcttcagtaacatgctagtcatggcaacattaaatatatctttgc 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttaggtcgttttgcttcagtaacatgctagtcatggcaacattaaatatatctttgc 320

                                                                       
Query: 121 tggttaccttttaagaacttcctgttttaatatatacaaaagtgtgtcagcaagttaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 tggttaccttttaagaacttcctgttttaatatatacaaaagtgtgtcaacaagttaatt 380

                                                                    
Query: 181 tggacgcagctcattttactgaaataataaactataagtgactatagataaaagcta 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggacgcagctcattttactgaaataataaactataagtgactatagataaaagcta 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)