BAC Information

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BAC

Clone NameMSMg01-120E16
Chromosome2 (Build37)
Map Location 119,531,264 - 119,531,707
singlet/doubletsinglet
Overlap geneRtf1
Upstream genePlcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622
Downstream geneItpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120E16.T7 (MSMg01no120_e16.b1)MSMg01-120E16.TJ (MSMg01no120_e16.g1)
ACCAG330695AG330696
length771837
length of high quality
(start - end)
444 (122 - 565)519 (191 - 709)
definitionCHROMAT_FILE: MSMg01no120_e16.b1 PHD_FILE: MSMg01no120_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:41 2005CHROMAT_FILE: MSMg01no120_e16.g1 PHD_FILE: MSMg01no120_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:41 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ACCACGACAACCCACCAACCAAAACCACGGNGCNGCTGGGGCNGGGGTTT
NNNNNATTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
CGCGGAATTCCTGATGTCTCTGGAGAGGATCTTATGGGAGATGAGGAAGA
TAGGGCCCGACTGGAGCAGATGACGGAGAAGGAGAGGGAGCAGGAGCTCT
TCAACCGCATAGAGAAGAGAGAGGTGTTGAAAAGAAGGTAAGCTGTCTGT
ACACTTAGTTTCTCACAGTTTAAGATTTTCTCCAGCTTCACAGTGGTATA
AGGCTTTACCCATATAATTATTTTTTTCATTTATTACAGTTTTTGATAAA
TTACACGAGATGCCAAACACTTCATTTCACAGGATGTCTTGTCCCACCGG
CCACCAAGTAAATGCACAGACACTTTGTATTAATTATGAGAGCTTGGCCT
GAGCTTGGCAGACCCTCAGCTAGCTCATCTAAGTAAACCCGACCCTCGAG
CTCTGTCACACCCTGTGGCTTGTTAGTTACCTTTTCCTCAGTCCCTGTAC
CTGTTCCTCCTTCCTCTGTGTCTGGCTGGTAAATCTCCCGCCTCTCTCTC
TCTTTCCCAGAGGTTCCTATCTCTGCCTGGAAGTTTGGCCTATCCTCTCC
TGCTTTGCTATAGGCCCGCCAGCTCTTTATTAGAGCGATCCAAAGGGGGA
GGAGAACATGTTTACACAACCCCGACACCGGTGATGCCTCCTAAAAGAAA
ATCTTTTCCCAGGGCACAAGA
AAACAAACAAAGAAAAAAAAACAAAAAAGAAAAAAAAAAGGAAAGAAAGA
GGGAGGGGGGGGTGGGTATCAATAATAATTATCTTCCTTTTCAACTTTGC
CCTCCTTTTTTNNNNTTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTAATTGCT
GGGAATTACAGGCACACATCGACATTCTTAGCTTTCCTCGTATTTTCATT
TAAACTGTAGAATTGGCTTGTCAAAGTCTATGAAAAACTGCTAGTGCTAT
TATTGGAATTTCACTGAATTTATAGATAAAGTTATAAATAATAAATATCT
CAATAAGATTGAAAGCTGGGCACAATATTACACACTAGTACTCCCAACAT
TTGGGATGTGAAGGATTGCTGTAAGTTTAAGGCTAGTGAGTTAAGGCTGG
GCTATAGAATGAAACCTTATCTCAAAAATACATACATACATACATACATA
CATACATACATACATGCATACATACATACATACATACATACATACATACA
TACATACATACTACAAATAACAATGAATCTTCTGGCCCATTAATATGAAT
TCATAGCACATATATCTAGCAACGGATAAAAATTCAAAATATAATATATT
TTTAAACCCTTTGTGAATAATAACAAATCAAGTCCCATTTTTTTTTATTT
TAAAGGGACAATACATCCTTGTGAAGTCTAGGTTGGCTTGAAATTCAATA
TGTAGCTAGGGATGACCTTGGAATCTTCACTCCCTTACTCCCATCTCCCT
GAGCCCTGGAGATTCTGACCTCATCACTGGGTTGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_e16.b1 MSMg01no120_e16.b1 CHROMAT_FILE:
MSMg01no120_e16.b1 PHD_FILE: MSMg01no120_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:41 2005
         (444 letters)



>mm_chr2_119531064_119531907
          Length = 844

 Score =  859 bits (444), Expect = 0.0
 Identities = 444/444 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggagaggatcttatgggagatgaggaagatagggcccgactggagcagatgacggagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggagaggatcttatgggagatgaggaagatagggcccgactggagcagatgacggagaag 260

                                                                       
Query: 61  gagagggagcaggagctcttcaaccgcatagagaagagagaggtgttgaaaagaaggtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagagggagcaggagctcttcaaccgcatagagaagagagaggtgttgaaaagaaggtaa 320

                                                                       
Query: 121 gctgtctgtacacttagtttctcacagtttaagattttctccagcttcacagtggtataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgtctgtacacttagtttctcacagtttaagattttctccagcttcacagtggtataa 380

                                                                       
Query: 181 ggctttacccatataattatttttttcatttattacagtttttgataaattacacgagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctttacccatataattatttttttcatttattacagtttttgataaattacacgagat 440

                                                                       
Query: 241 gccaaacacttcatttcacaggatgtcttgtcccaccggccaccaagtaaatgcacagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccaaacacttcatttcacaggatgtcttgtcccaccggccaccaagtaaatgcacagac 500

                                                                       
Query: 301 actttgtattaattatgagagcttggcctgagcttggcagaccctcagctagctcatcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actttgtattaattatgagagcttggcctgagcttggcagaccctcagctagctcatcta 560

                                                                       
Query: 361 agtaaacccgaccctcgagctctgtcacaccctgtggcttgttagttaccttttcctcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtaaacccgaccctcgagctctgtcacaccctgtggcttgttagttaccttttcctcag 620

                                   
Query: 421 tccctgtacctgttcctccttcct 444
           ||||||||||||||||||||||||
Sbjct: 621 tccctgtacctgttcctccttcct 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)