BAC Information

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BAC

Clone NameMSMg01-120F14
Chromosome2 (Build37)
Map Location 114,455,386 - 114,455,706
singlet/doubletsinglet
Overlap geneAtpbd4
Upstream geneFmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770
Downstream geneLOC100043219, LOC100043222, LOC100043232, LOC100043236, BC052040
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120F14.T7 (MSMg01no120_f14.b1)MSMg01-120F14.TJ (MSMg01no120_f14.g1)
ACCAG330739AG330740
length721751
length of high quality
(start - end)
327 (45 - 371)370 (132 - 501)
definitionCHROMAT_FILE: MSMg01no120_f14.b1 PHD_FILE: MSMg01no120_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:45 2005CHROMAT_FILE: MSMg01no120_f14.g1 PHD_FILE: MSMg01no120_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAAGAGGATCCGCGG
AATTCAGCTTTTCCAGAATATGGCATTAGTCTTTCCTCTCAGGTGTCCTA
TGTGAGTGTTCTGATGCTTGGCCTATTCTCAAGGGAAGTTAGGGAGAGGT
GAGCCCAAAGATGCCAGATTTCATCATTTGATTTTTTTTTCCATTGAACT
TTACTTTTTCATGTTCTTTTAGAATTTAACTACATTGTTAATTTTAGCAA
TTAACTACGTTATCTATAATATTGAGGGAGTGTATTTTCATTAATTCATT
TGTAAAGAGTCTTAAGTTTTTTATTCCTTTTGAAAATTAGATGAACTGAG
AGCTTAGAGGACTTATTTTCTTCTACGAGAATATAAAGAATATGAAAATG
TATGTGAAGAGTCTTATAAAGAAACCGTGACATGCTTGTTATACAGAGAT
CATTGAGCAGTGGCAGAACATCGTAGCTCTTTGCAGTGTCCATGATGTAT
TTGGGGCAGTTACTGCTCTGCACGTCGTTGTGAAGTTCAAGTTGCTGAAT
GTATGATCTAACTTCAGACTAAAGCCAGCCCAAAGCCATTTCCTTAGACG
TTATTTAAAGGATGTTGACACGTCTTACACACCACCCTTGATATACCCTT
CACTGATCAGTGGACTTTAGCCTCTTAAAACTTATAATACCCGTAGAAAA
AAATCCGTCAAAATTCCATGA
NTTTTACCTGTCAACCCCCCTCTACTCTCCTCCTCCCNCCCCCCATTTTT
CCTGTTTACTATGAAGTCGGTGGAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATCTGAGGAAATCAAAT
GTCTGAATAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCAAGGACGTGGAAAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCATAAAATTGGACATGGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCGG
CAAGAAGGACATATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAAGCCAGATGCCCCTCAACAACGAAACGGATACAG
AAAATGCGGTAACTTTACACAATGGACTACTACTCAGCTATCAAAAAGAA
TGAATTTATCAAATTCCTACTTTAATCGAATGGACCTGGATGGTATCATC
CTGATCGAGGTAACCCAATCACATAGGAACTCACGCAAGATAAACTCACT
GATAAGGGGATATGAACCCAGAAATTTATAATACCCACGATATATTATAT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_f14.b1 MSMg01no120_f14.b1 CHROMAT_FILE:
MSMg01no120_f14.b1 PHD_FILE: MSMg01no120_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:45 2005
         (327 letters)



>mm_chr2_114455182_114455906
          Length = 725

 Score =  522 bits (270), Expect = e-152
 Identities = 310/332 (93%), Gaps = 20/332 (6%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcagcttttcc--aga-atatggcattagtctttcctctcaggtgtcctatgtga 61
           |||||||||||||  |  ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ggaattcagcttt--ctaagacatatggcattagtctttcctctcaggtgtcctatgtga 468

                                                                       
Query: 62  gtgttctgatgcttggcctattctcaagggaagttagggagaggtgagcccaaagatgcc 121
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 467 gtgttctgatgcttggcctattctcaagggaagttagggagaggt--gcccaaagatgcc 410

                                                                       
Query: 122 agatttcatcatttgatttttttttccattgaactttactttttcatgttcttttagaat 181
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 agatttcatcatttga-ttttttttccattgaactttactttttcatgttcttttagaat 351

                                                                       
Query: 182 ttaactacattgttaattttagcaattaactacgttatctataatattgagggagtgtat 241
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 350 ttaactacattgttaattttagcagttaactacgttatctataatattgagggagtgtat 291

                                                                       
Query: 242 tttcattaattcatttgtaaagagtcttaagtttttt------attccttttgaaaatta 295
           |||||||||||||||||||||||||| ||||            |||||||||||||||||
Sbjct: 290 tttcattaattcatttgtaaagagtcgtaag------caaggaattccttttgaaaatta 237

                                           
Query: 296 gatgaactgagagcttagaggacttattttct 327
           ||||||||||||||||||||||||||||||||
Sbjct: 236 gatgaactgagagcttagaggacttattttct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 725
Length adjustment: 9
Effective length of query: 318
Effective length of database: 716
Effective search space:   227688
Effective search space used:   227688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)