BAC Information

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BAC

Clone NameMSMg01-120M20
Chromosome2 (Build37)
Map Location 178,427,465 - 178,427,615
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039233, LOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26
Downstream geneLOC100039368, LOC665264, LOC100043168, LOC100039413, Cdh4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120M20.T7 (MSMg01no120_m20.b1)MSMg01-120M20.TJ (MSMg01no120_m20.g1)
ACCAG331077AG331078
length718707
length of high quality
(start - end)
79 (64 - 142)151 (59 - 209)
definitionCHROMAT_FILE: MSMg01no120_m20.b1 PHD_FILE: MSMg01no120_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:22 2005CHROMAT_FILE: MSMg01no120_m20.g1 PHD_FILE: MSMg01no120_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CCAGACTTGTCCCAGCTTTTGGGATAGCCCCACTCCAGTTGTTCAGGACC
CATATAAAGACCAAGCTGCACATTTGGTACATATGTGCGGGGAGGGGATG
GCTAGGTATAGCCTGTGTATGCTCTGTTTGGTGGTTTAGTCTCTCAGAGC
CATAAGGGTCAAGGTTAGTTGATTCTGTTTGTCTTTCTGTGGAGTTCCTA
TCCCCTCCAGGACCCTCGGTTCTTCCATAAGAGTTCCCAAGCTCCACCCC
CTGTTTGGCTGTGGGTGTCTGCATCTGTCTGAGTCAACTGCTGGATGGAG
CCTCTCAGCAGACATCCATCTGCAAGCATAACATAGTATTATTAATAAAG
TCAGGGACTAGTGCTTGTCCATGAAATGGATCTCTAGTTGGATCCATTAT
TGCTTGGCCATTCTCTCGGTCTCTGCACCATTGCGTGTCATTGCATTTCT
TATGGACAACATGAATTTTGCNCTGGAAAGTTTTATGTGCGCCGTGATCT
CCTTGGTGTCCCCACGTTTTTCCCTGCCCGCTTATAAGCAACGACTTCCT
CACAAAACACATTGTGCAAAAATAAAGGCTCAGCGATAGGTGAAAAGAAA
AAAAGTACGTAGGGTAAACAATGGAAAAGGTGAAAAACTATGGGAACATG
GAGGGTGGAAGATAATGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCTACCAGGTCAGCTAGGGGCTTCACACAGATAGACCTACAG
GGAAGGGAGTGGCGGGGAGGGGTCTGTCAAGAAGTGGGGCAGAATATGAA
GAAAGCAGGAAAAGGAGAGCTCAGAATCAGGACTGTTTTCCCATCCAGTG
AAAAGCACAACAATAAAAAGATAACAGAGCTGGAACATGGACCAAAGTTT
CCTGTTTGAGGTCACAGCAGAATGTGTGCTGCAAATGAAAAGATGGGCCT
GGGGATTGGTGAAACTGATGTTCTTGGGGAGCATCTAGGGGCAGCAATGC
ACGGGGGACACTACGGGAGAGGTGGAACTCAAGATACTGAGGCTTGGCAG
ACTGTGTCCCTGATGAGGGAGCTCAGGGGAGGAGGATGCACACTGAGGTT
ATATGCGCTGTATACATCGGGGAGGGTGAGTGACACGGCACAGGCTTGAG
GGCCTAATGACACAGGCCAGGGAGCCCTCATAAGCTCACATGCCGAGAAC
TGCAGCCTGCTGGCAGGAATAGGAACCACTGAGGGAGGGGGGGGATAAAG
ACTCAAGGAAAAACGGGGGGCTATGCCAGAAACAAACCGGATTACTGGAA
AATTTCTCCAAAAACAGTGTGGATGGGTCCTGAAACCAAGGGGGAAGGGG
CGAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_m20.g1 MSMg01no120_m20.g1 CHROMAT_FILE:
MSMg01no120_m20.g1 PHD_FILE: MSMg01no120_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:22 2005
         (151 letters)



>mm_chr2_178427265_178427815
          Length = 551

 Score =  246 bits (127), Expect = 6e-70
 Identities = 145/151 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaccaggtcagctaggggcttcacacagatagacctacagggaagggagtggcgggga 60
           |||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 351 tctaccaggtcagctaggagcttcacacagatagacctacagggaggggagcggcgggga 292

                                                                       
Query: 61  ggggtctgtcaagaagtggggcagaatatgaagaaagcaggaaaaggagagctcagaatc 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 291 ggggtctgtcaagaagtggggcagaatatgaaggaagcaggaaaaggagagctcagaatc 232

                                          
Query: 121 aggactgttttcccatccagtgaaaagcaca 151
           |||||||||||||||||||||| | ||||||
Sbjct: 231 aggactgttttcccatccagtggagagcaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 551
Length adjustment: 8
Effective length of query: 143
Effective length of database: 543
Effective search space:    77649
Effective search space used:    77649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)