BAC Information

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BAC

Clone NameMSMg01-121A02
Chromosome2 (Build37)
Map Location 15,069,647 - 15,181,515
singlet/doubletdoublet
Overlap genenone
Upstream geneStam, 2010003H20Rik, Mrc1, Slc39a12, Cacnb2, LOC100041164, LOC625335, LOC625342, LOC100041220, Nsun6, Arl5b, LOC633061
Downstream geneLOC667329, LOC227588, LOC625457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121A02.T7 (MSMg01no121_a02.b1)MSMg01-121A02.TJ (MSMg01no121_a02.g1)
ACCAG331231AG331232
length773717
length of high quality
(start - end)
433 (131 - 563)493 (66 - 558)
definitionCHROMAT_FILE: MSMg01no121_a02.b1 PHD_FILE: MSMg01no121_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:38 2005CHROMAT_FILE: MSMg01no121_a02.g1 PHD_FILE: MSMg01no121_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,181,083 - 15,181,515)(15,069,647 - 15,070,139)
sequence
AAAAATAAATATAAGAAAGTAAATTGAAAACCACCCAAACCGCAGAAAAA
AAAAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTACTATGTATATCCACATGGCCTCAAGCTCACATAGATCCAT
CTGCCTCTGCCTCCTGAATGCTAGGATCACAGCTGTACACTATACCACGA
TGCCCAGGAATAACTCACTTCTTAATGAAACCCAAAATTTTGCTTCAAGG
TATGATAAAAACTAAAACAGTCAACACAAATCCATTGGATGATACAGAAT
AAAACTACAAAGCCAGATGTGACAGTTCATATCAGTAATCCCAGCATTCA
GATGGCTGAGACAAGGGCAACATTCGTTCAACCAGTTTGGACTCTAGCAA
AATCATAACTGAAAAGTTCAATACAAATAAACATGCATACATATATTCAT
ACATAATATAAAGCAGACACACATACAAACATACATGAAGGATCCACTCT
AGTGCTTTAAGTATAATTCACATACATTATAACATGTAAGGCTTTTCAAT
TTGTGATGAGCCTGTATTAAGGTAGTTTCTGGAAAGAATGTAGTGTTAGA
AAATTCCCTGAGCCTTATGTGTCAGAGAAGTTTTGCAGAAGTATCCCATG
GGAAATGAAATTCTTGGGGTAAGGGCCCCAAAATCAGGGAACCCCCCCTC
CGAAACCCTTTTATCCACACCCCCCCGAAAAAAATTGCCCCAACCGCATA
CGTGGTGAACAAAAACACCCACT
TCTGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCATGCTTCAGAGGGAAAAACAAACAAGCCAGCCAT
GTGAAATCTCTACCTAAGTGGTCACAGGCCACTTCTACAGGTGGGAGGTT
GGGGATGTTGAGCTAGGTCTGAAGGTGGCTGAGCACCTGAAATTGAGTAC
AGATTTAGGGTGCTGAGCTGGGAGTACGGGGGAGGACACACTAACCAGTA
GTTGGAGGCGCCCAACTGTTGAGTCAGTAAGGCAAGTTGAAATTGAGCAA
CTGTATATATCTGTGTTTTTCATATGTGGATCCAATATTGGGGCTGGTAG
CATGGCCCATTCTAGGAGATTAGGTGGGGTAGCAAAAGCTACATGCTACA
ACAGAGGTACTAGAATTAAGACACAAATCTATGTGTCCCCACCAAGAGAG
CAAAAACTTAGCCTCTTTATCAGGGTTTTTTCTTCTGGCTTCCCTTGACA
TTTTCTGCTGTTCAAGTCTATGCTAATCTCCCTGGCCTCCTCTGTTATCT
CATTCACTGAGTTCACACCCAGGGCAGGGTTTCATTGTTGGACATACTGT
TTCTTCTGAGATGAACCAGTTGTCCTGTTGCTTTACTTTTATAGATGTCT
GATTAGATATCAGTACCCTTTGATGATTCACAGAGGCCCCTTATGTAATG
CCCTGTTCCCCGTCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_a02.b1 MSMg01no121_a02.b1 CHROMAT_FILE:
MSMg01no121_a02.b1 PHD_FILE: MSMg01no121_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:38 2005
         (433 letters)



>mm_chr2_15181059_15181891
          Length = 833

 Score =  791 bits (409), Expect = 0.0
 Identities = 427/433 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaagctcacatagatccatctgcctctgcctcctgaatgctaggatcacagctgtacac 60
           |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 457 tcaagctcacatagatccatcttcctctgcctcctgaatgctaggatcaaagctgtacac 398

                                                                       
Query: 61  tataccacgatgcccaggaataactcacttcttaatgaaacccaaaattttgcttcaagg 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tataccatgatgcccaggaataactcacttcttaatgaaacccaaaattttgcttcaagg 338

                                                                       
Query: 121 tatgataaaaactaaaacagtcaacacaaatccattggatgatacagaataaaactacaa 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tatgataaaaactaagacagtcaacacaaatccattggatgatacagaataaaactacaa 278

                                                                       
Query: 181 agccagatgtgacagttcatatcagtaatcccagcattcagatggctgagacaagggcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agccagatgtgacagttcatatcagtaatcccagcattcagatggctgagacaagggcaa 218

                                                                       
Query: 241 cattcgttcaaccagtttggactctagcaaaatcataactgaaaagttcaatacaaataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 cattcgttcaaccagtttggactctagcaaaatcataactgaaaagttcaatacaaataa 158

                                                                       
Query: 301 acatgcatacatatattcatacataatataaagcagacacacatacaaacatacatgaag 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 157 acatgcatacatatattcatacataacataaagcagacacacatacaaacatacatgaag 98

                                                                       
Query: 361 gatccactctagtgctttaagtataattcacatacattataacatgtaaggcttttcaat 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  gatctactctagtgctttaagtataattcacatacattataacatgtaaggcttttcaat 38

                        
Query: 421 ttgtgatgagcct 433
           |||||||||||||
Sbjct: 37  ttgtgatgagcct 25


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no121_a02.g1 MSMg01no121_a02.g1 CHROMAT_FILE:
MSMg01no121_a02.g1 PHD_FILE: MSMg01no121_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:38 2005
         (493 letters)



>mm_chr2_15069447_15070339
          Length = 893

 Score =  938 bits (485), Expect = 0.0
 Identities = 491/493 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgcttcagagggaaaaacaaacaagccagccatgtgaaatctctacctaagtggtcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 catgcttcagagggaaaaacaaacaagccagccatgtgaaatctctagctaagtggtcac 260

                                                                       
Query: 61  aggccacttctacaggtgggaggttggggatgttgagctaggtctgaaggtggctgagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggccacttctacaggtgggaggttggggatgttgagctaggtctgaaggtggctgagca 320

                                                                       
Query: 121 cctgaaattgagtacagatttagggtgctgagctgggagtacgggggaggacacactaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgaaattgagtacagatttagggtgctgagctgggagtacgggggaggacacactaac 380

                                                                       
Query: 181 cagtagttggaggcgcccaactgttgagtcagtaaggcaagttgaaattgagcaactgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtagttggaggcgcccaactgttgagtcagtaaggcaagttgaaattgagcaactgta 440

                                                                       
Query: 241 tatatctgtgtttttcatatgtggatccaatattggggctggtagcatggcccattctag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatatctgtgtttttcatatgtggatccaatattggggctggtagcatggcccattctag 500

                                                                       
Query: 301 gagattaggtggggtagcaaaagctacatgctacaacagaggtactagaattaagacaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagattaggtggggtagcaaaagctacatgctacaacagaggtactagaattaagacaca 560

                                                                       
Query: 361 aatctatgtgtccccaccaagagagcaaaaacttagcctctttatcagggttttttcttc 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catctatgtgtccccaccaagagagcaaaaacttagcctctttatcagggttttttcttc 620

                                                                       
Query: 421 tggcttcccttgacattttctgctgttcaagtctatgctaatctccctggcctcctctgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggcttcccttgacattttctgctgttcaagtctatgctaatctccctggcctcctctgt 680

                        
Query: 481 tatctcattcact 493
           |||||||||||||
Sbjct: 681 tatctcattcact 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)