BAC Information

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BAC

Clone NameMSMg01-121A03
Chromosome2 (Build37)
Map Location 7,043,309 - 7,043,559
singlet/doubletsinglet
Overlap genenone
Upstream gene5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387, Cugbp2, LOC100040659
Downstream geneLOC100040648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121A03.T7 (MSMg01no121_a03.b1)MSMg01-121A03.TJ (MSMg01no121_a03.g1)
ACCAG331233AG331234
length1,058777
length of high quality
(start - end)
---252 (135 - 386)
definitionCHROMAT_FILE: MSMg01no121_a03.b1 PHD_FILE: MSMg01no121_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:38 2005CHROMAT_FILE: MSMg01no121_a03.g1 PHD_FILE: MSMg01no121_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGAAAAANGAAGAAAGAACGAAGAACAAAGGAGAAAAGGGAGAANAAAAA
NGAAAGAAAGAAGGGAGAGAAGGAGAAAAGGAGATCGGGGGNCCCCACGA
AAAAACCGTTTGGAGTAGATCTAAAAAAATTTGGCGGGCCGGCTTAATAC
GGAACATCAATTATATGCGAAGNAGGAAGGGCGNCGGGNAAATTTCTAAC
AAATATTTTTTTCTACAAAGAAAATAAGGAGTGTAGGAAACATCGTGATA
TAAAAAGGAGGTTTGTCAGAGGTTCCTTTTTAAAAGAAAAAAAAAAGAGG
TGGAAAAGGACGGCGTGGCGGTGTAAAAGGAAATTTTTATATAAGGTTTT
CTTGTTAATAGGGGAAAAAAAAACGGAGGGAATAAAAAATGGTTAAAGGG
TAAAGGGGGAAAGGGGGAAAAAAAAAAAATTTTGCCTTTTTTAGAAAGAA
AAAAAAAATAATTGGGGAAAAAAAAATGTATTTTTTCTTTTAAAAAATGG
CGGGGAGTTATGTTGAAAATATGGGCGAAACAGAAAAAACACGTTTGATT
TTTAAAAAAGGACGTTTATTAAAAAGGGGGGGGGTTGGTGTGCAAATAAA
CGCGACGGAATTATAAAAGAAAAAAAAATATCCTATTTGGGGGAGAGTGA
GGTGGGGGTGCATATCGTTGTTGTGGGGGGGAAGAAAAAGAAAAGAATGT
GGGATCTCGAATTGTGGGGGGGGGCAAAAAAAATTATTTTCCTGTGTTGT
GGAAATATTTGTTTGGTGGGGGGGGTGGTGGGCGGCCCTGCTGTGTTTTA
TTATGTTTTAAATTTCGGATGATCTTAGGAGTAACTATTATTTGTGGCGT
GGTTTTGTATTGTTATGGGGGTAAGCATTAGAAAAGTATTGTTAACATAA
TTATGTATATGTGTGAAAGGGCGTGATGGTTGTTTGAATATTGGTTAGAA
GAAAGATAATACAAAACGGGGTGTTACAAGGTGTGGGGCAGAAAAATAGT
TGATATGGGCGTGTTAGAGGAGGTGGGGGAATTAAGGTGTGAGGGTGAGA
AAAATAAN
AAAAGAAAAGGAAAGAAACAAATAAGAACAAACCACACAAAACCACCCAC
TTGCGNTAATCGATGCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTCTCATATAAAGT
TAATTAATCAAGAGAAAGTTAAAATTTAATTAAAAATTTTGTCACTAATT
CTGGCCCTAGTGATAAGGTGGAAGAATATAATGGTTGTCACCTGTCTGTC
TGTTGATTTATCATTAATTAAGACCAGCTGGTGAAGGCATCCTTGACACT
CAAGTGGTGAGACAAGGCTTAGATATAGTTACCATGGGTGCAAATTGAGG
TCCCTGGAGTCTCTAAATCCATCCCATCCCTATTCTATCTTAGAAACTGG
CATCTGTAAAACCCAAATCCCTTTGTTACGGCTGATATAACGACCTGTAA
AAATAACAAACAACACTTCTCAAAATAATTGTTTCAGGATTTCAAAGATG
TTTCAGTGGTATCTAGAAATCCCTGCATATGCCTCATGCTCTTGGTGGAA
TCCAGCCGGCTTAAGAAGCTCATGGTGTGCTAACAATATCTCCTTCTCTG
AAAAATGTTGGAGTGTGTAGCTGGTGCCAAATCTTCCCGTAATCTTGGTC
TGGGAATACTTTTATAAATCCAATTTTCTGAAGCCCCCTCTGCCTGTCCT
TTTGTGGAAAAAAACTATCCCTGTCCTACATTCAATTACCCTGGAATCGC
GAAGGGAAGCCTGCTGAATTCTACCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_a03.g1 MSMg01no121_a03.g1 CHROMAT_FILE:
MSMg01no121_a03.g1 PHD_FILE: MSMg01no121_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:39 2005
         (252 letters)



>mm_chr2_7043053_7043704
          Length = 652

 Score =  478 bits (247), Expect = e-139
 Identities = 250/251 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattctcatataaagttaattaatcaagagaaagttaaaatttaattaaaaattttgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cattctcatataaagttaattaatcaagagaaagttaaaatttaattaaaaattttgtca 448

                                                                       
Query: 61  ctaattctggccctagtgataaggtggaagaatataatggttgtcacctgtctgtctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ctaattctggccctagtgataaggtggaagaatataatggttgtcacctgtctgtctgtt 388

                                                                       
Query: 121 gatttatcattaattaagaccagctggtgaaggcatccttgacactcaagtggtgagaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gatttatcattaattaagaccagctggtgaaggcatccttgacactcaagtggtgagaca 328

                                                                       
Query: 181 aggcttagatatagttaccatgggtgcaaattgaggtccctggagtctctaaatccatcc 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aggcttagatatagttaccttgggtgcaaattgaggtccctggagtctctaaatccatcc 268

                      
Query: 241 catccctattc 251
           |||||||||||
Sbjct: 267 catccctattc 257


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)