BAC Information

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BAC

Clone NameMSMg01-121E15
Chromosome2 (Build37)
Map Location 66,835,283 - 66,835,409
singlet/doubletsinglet
Overlap genenone
Upstream geneA330102K23Rik, Galnt3, LOC620893, Ttc21b, Scn1a, LOC100039486, LOC383706, Scn9a, Scn7a, LOC383707, LOC100039540
Downstream geneGm1322, Cmya3, LOC621171
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121E15.T7 (MSMg01no121_e15.b1)MSMg01-121E15.TJ (MSMg01no121_e15.g1)
ACCAG331439AG331440
length880721
length of high quality
(start - end)
130 (163 - 292)---
definitionCHROMAT_FILE: MSMg01no121_e15.b1 PHD_FILE: MSMg01no121_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:01 2005CHROMAT_FILE: MSMg01no121_e15.g1 PHD_FILE: MSMg01no121_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACACAAAGAAAAACACAGAAAAAAAACNAAAAAACAAAAAAACAAAAACA
AGGAGGAAAAAAANAAACAAAAAAACAAAGGGGGGTATCXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACTATTT
ACTCAAAACCAAATTTGAATTCACTCTGTACCCTACACAAGTCTTTAACT
TTTGTTACCTTCCAACTTTAGATTTCTAGTGTTGAATTTGGTTCATTTTT
AAGTGGAAATAATTTTTCTTTAGTACACACACACACACAGACACACACAC
TTATATGTATTTCATAAGTAGACATTAGCAAATGTTTATCTTTTAAGTTT
TGGATGATTAAGGAAACAATGTTTAGGCAATAATATATGAGACAACATAA
TAAATAATTTTTTTTGATGATCAGGTATAGGGGAGACAGGAAAGAAATTT
TTATTGCCCCCCCCCCCCCCCGGAAATATGCGGGAATAGTGGAGTGGGGG
GTCGAGAATCTCTAGAAAGATAAAAGAACCTGGGGATAGGGAAAGACCTC
CAAGGACTCGATGGTGGAATGACCTTTGGGCCAAGGTTGTCTAAGAAGGA
TGGGATATGGGAATCTTGTAAATTGATGTACCTTCTCTTTGGATGGGACA
GGGGCCGCCATGTGGTACGGATGGTGGGGTTACGGGGGCGCATCGTTAAA
AAATTTTTTGGGACGGAAGAAGTTGGGGTGTGTTTGTAATGTGAAGTTGC
GGCGTGAAATTTTTTTGATGTGAGAATCTGCAAATGGAGGAGGTATTTTT
AGGGGGATCTATCACCGAGCTGCGGATGTTTCTATTAAGTGTAAAGAGGC
GGAGGGGATGAGTTAAATGTGTGTATATAT
AAACAAAAAACAACAAGAGAAGGAAAAAAGAGAAATAAAAAAGAGCAGCA
NGGCGCTGGTGNNGACAGAAGAGGAGGCGGGGCGCTGTTCGCACGGGGGA
ANANAAAGTGCAGGAGAGNGAGNNGGANNAAGANCAANGGAGAGGAACGA
GNGACAGCAGNACAGGAGAGAGGAGGGCCAGCGNCCAGGGGGAGACGAGC
GGAGGGGGGCCGGAACCGAGGGGAACCGAGGACAAAGAAAGAGGGCGACA
AAAGAAAGCACCAAAATAAAACGGGGAAAGACGCGGGGAAAGAAACGAAA
GCAGGCAGGGAGAAGGGGCGGGTTTTTTTTTCAGCGGAAGGGGAAGACCG
GGAATATTTTTTTCCCCCCCCCCCCCTTTCTGACTATTTGCTTTCCATTA
GTATATAGGGTCAGTAATGAAAAAAAGAGAGAACGCGGGGGGGGGGTAAT
CTATATCATAACCCTCCCTCAGGGGTCAGTGAAAATCGGCGAGGGGGGGG
GGGATTACTATACTAGCCTGTTGTTCACACACCACCAGATTGGTATGGTG
GCTGGCGCGTAGGCGGCGGCTACGGGGCAGGGGAGGGGGGGGTCGTCAGG
AAAAATGTACGGGCGCGTAGGGGCGCCCTTCATAAGAACTTTGAAAAGGA
GCCACCGGGGTCACTTTTTTTTCGCGGGGAAGGGTAGGCGGCCCTTAGGT
GGTTCTGCACTTAACCGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_e15.b1 MSMg01no121_e15.b1 CHROMAT_FILE:
MSMg01no121_e15.b1 PHD_FILE: MSMg01no121_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:01 2005
         (130 letters)



>mm_chr2_66835083_66835612
          Length = 530

 Score =  246 bits (127), Expect = 5e-70
 Identities = 127/127 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgaattcactctgtaccctacacaagtctttaacttttgttaccttccaactttaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgaattcactctgtaccctacacaagtctttaacttttgttaccttccaactttaga 260

                                                                       
Query: 61  tttctagtgttgaatttggttcatttttaagtggaaataatttttctttagtacacacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctagtgttgaatttggttcatttttaagtggaaataatttttctttagtacacacac 320

                  
Query: 121 acacaca 127
           |||||||
Sbjct: 321 acacaca 327


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 530
Length adjustment: 8
Effective length of query: 122
Effective length of database: 522
Effective search space:    63684
Effective search space used:    63684
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)