BAC Information

Click to search

BAC

Clone NameMSMg01-121L01
Chromosome2 (Build37)
Map Location 67,027,356 - 67,027,647
singlet/doubletsinglet
Overlap genenone
Upstream geneTtc21b, Scn1a, LOC100039486, LOC383706, Scn9a, Scn7a, LOC383707, LOC100039540, Gm1322
Downstream geneCmya3, LOC621171, LOC227995, B3galt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121L01.T7 (MSMg01no121_l01.b1)MSMg01-121L01.TJ (MSMg01no121_l01.g1)
ACCAG331739AG331740
length707716
length of high quality
(start - end)
163 (194 - 356)292 (68 - 359)
definitionCHROMAT_FILE: MSMg01no121_l01.b1 PHD_FILE: MSMg01no121_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:33 2005CHROMAT_FILE: MSMg01no121_l01.g1 PHD_FILE: MSMg01no121_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCGCTAAACGACTACTATATGCAGAGATCCGCGGAATTCTAATA
GAGTATCTATCTCTTATGAATATAAAATACATAAAAAATATATAAACGCT
TTATCGAAAACACATTGCCAATCAGAACGGGAAACACAATGTACATAGCG
AAAAAAAATCCACACTCATACATGCACACAGCCATACACACATGCATACC
CTTACCTACACACATATACCCACACATACACCCACACCCATATACACACA
TTCATACACACAAACCTATACATTCACACATCCGTATACACACATATCCT
TACCTATACACATATACCCACACATACACCCACACCCATACACACACACC
ACACACTTTATATACCACACACCGCCTTGAGACATTTCCGGATGTGGTAG
TCTGACTGAAAACAATGAAGCCCCCAAGGTGCTTTATTTTTATCCATCCG
CGCGCGTGTGTGTCACGAGCCACCCTGTGTCCCTGTGAGTGTGTCTCTTT
ATGCCCCCCCCCCCCTCCCTGTCCCTTGCACGCCGCCACTCTTTCCCCCC
TACTACACCCACACAACACAACCCAAACCACACTCCCACCCCTCCCCCCA
CCCTCCTCAACATTACACCACCCCCCCACCTCCCACCCCCCCCCTGTTTA
TCAACCTATCCCGCCCGTCGCCGTCCCCCCCCCCTCCCCCCTCAATACTC
ATTCACC
TGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTTTTATTGTTTTATATTAGAGGAAATTGTTT
TAAAATAAGATTCTGTAACACAGGGAAATGTTAGAGCATAAATAGCTCTC
TTTAATGATCTTCCATGTTTTTTGAAAATACTGTAATCTGGGAAATCATG
CTAAGCTGATGCTAGCTCTTTGTTTTCTTACTGAGAAATACCCTTCTAGC
CCAAGTTACACTCAAATAAACAAGACACATTCTCTCTATGTTTGATGAAA
TATTTAAAATATTAATGTATGCACATATATTGTGCATGTTATTTTTGCAT
ATATGTGTATATACACTATCCTCCACACTCAAAATTTTATAGATTTTCAT
TTAACTGCAGAAATTCTCAGCCTTTTTTTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTACATCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC
GACCTTCCTTCCTTCAGTTCTGCTTCCCAAGAACGCCCCGTCCATGGTTA
CAACCCCTCCTGGCAAGCTTTCACCTCTTATCCAATTTGGACATCAGCCT
CTTTTTCAATTATCTCTAATCTCCCACTCCCTTTTTTCCACACACGCTAT
CCGCGATTAATAACTACCACATCGTTATCCCATATACATAATAATTTACC
CCCCCCCCTCTCTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_l01.g1 MSMg01no121_l01.g1 CHROMAT_FILE:
MSMg01no121_l01.g1 PHD_FILE: MSMg01no121_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:33 2005
         (292 letters)



>mm_chr2_67027156_67027847
          Length = 692

 Score =  557 bits (288), Expect = e-163
 Identities = 291/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttttattgttttatattagaggaaattgttttaaaataagattctgtaacacagggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ctttttattgttttatattagaggaaattgttttaaaataagattctgtaacacagggaa 433

                                                                       
Query: 61  atgttagagcataaatagctctctttaatgatcttccatgttttttgaaaatactgtaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atgttagagcataaatagctctctttaatgatcttccatgttttttgaaaatactgtaat 373

                                                                       
Query: 121 ctgggaaatcatgctaagctgatgctagctctttgttttcttactgagaaatacccttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 372 ctgggaaatcatgctaagctgatgctagctctttgttttcttactgagaaatacctttct 313

                                                                       
Query: 181 agcccaagttacactcaaataaacaagacacattctctctatgtttgatgaaatatttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agcccaagttacactcaaataaacaagacacattctctctatgtttgatgaaatatttaa 253

                                                               
Query: 241 aatattaatgtatgcacatatattgtgcatgttatttttgcatatatgtgta 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aatattaatgtatgcacatatattgtgcatgttatttttgcatatatgtgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)