BAC Information

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BAC

Clone NameMSMg01-121O01
Chromosome2 (Build37)
Map Location 122,196,866 - 122,197,464
singlet/doubletsinglet
Overlap genenone
Upstream geneStrc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf
Downstream geneSlc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121O01.T7 (MSMg01no121_o01.b1)MSMg01-121O01.TJ (MSMg01no121_o01.g1)
ACCAG331879AG331880
length690689
length of high quality
(start - end)
643 (45 - 687)599 (72 - 670)
definitionCHROMAT_FILE: MSMg01no121_o01.b1 PHD_FILE: MSMg01no121_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:48 2005CHROMAT_FILE: MSMg01no121_o01.g1 PHD_FILE: MSMg01no121_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGCCGGATACTGAATGGCAGAGAATCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAATTGGACATAGTAATACCAGAGGATCCCGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGTGCCAACCGGTAAGAAGGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCTAGAACCTGGAAACCCAGATGCCCC
TCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTA
CTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGA
TGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAAC
TCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGG
ATACCCAAGATATAAGATACAATTTGCTAAACGCATGAAA
CACTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAATTCATCTTGGGAGTGTCTCTCAGAAA
CCAAAAAAGTGGGAGCTGAAGAGATGACTTAAGAGCACTTAAATGCTCTT
CCAGAGGACTGACTTTGGTCCTAGCACCCACGGCAGGCAAGTCCAGCTCC
AGGAGCTCCTATACCTTCTAGCTTCTGTGGAATCTTGTGTATATGTGCAT
GCACACGTATGCACACACACACGCACACACACACAGAGGCAAAAATACCT
GCACACATAAAAATAAATAGTTTTAAAAGTTATTTTAATATAGGCTTAAA
GATAAATGCTGAGAGAAAAAGAAGCTTCCAGTAGAAAAGATACACCCAAA
AGCGTGAGTGTAGGCTTTAAAGTGCTGAAGAAGCAGGACGTCTCCAAGTG
TGGGTCCAGGCTGTGGAAGACTCCTCGAGAGTCGTGCTCACTGCTTTTTA
TGTTTTTGTCTGTTTTTTCGTTTTTTTTTTTTGTTTTGTTTTTTTACAAT
AATCATATATAGGATTTTAGAGGGTTTTGAAGTTATGACATTCAAAGAGT
TGCTAAGAGACCCAAATGAGACCACAAGGTGCTTCCTTAGGGGTCCCCAA
TAAGGCTATAATTGATAAGGTATAAGTGTAGCTCACTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_o01.g1 MSMg01no121_o01.g1 CHROMAT_FILE:
MSMg01no121_o01.g1 PHD_FILE: MSMg01no121_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:48 2005
         (599 letters)



>mm_chr2_122196666_122197664
          Length = 999

 Score = 1158 bits (599), Expect = 0.0
 Identities = 599/599 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caattcatcttgggagtgtctctcagaaaccaaaaaagtgggagctgaagagatgactta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caattcatcttgggagtgtctctcagaaaccaaaaaagtgggagctgaagagatgactta 260

                                                                       
Query: 61  agagcacttaaatgctcttccagaggactgactttggtcctagcacccacggcaggcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagcacttaaatgctcttccagaggactgactttggtcctagcacccacggcaggcaag 320

                                                                       
Query: 121 tccagctccaggagctcctataccttctagcttctgtggaatcttgtgtatatgtgcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccagctccaggagctcctataccttctagcttctgtggaatcttgtgtatatgtgcatg 380

                                                                       
Query: 181 cacacgtatgcacacacacacgcacacacacacagaggcaaaaatacctgcacacataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacacgtatgcacacacacacgcacacacacacagaggcaaaaatacctgcacacataaa 440

                                                                       
Query: 241 aataaatagttttaaaagttattttaatataggcttaaagataaatgctgagagaaaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataaatagttttaaaagttattttaatataggcttaaagataaatgctgagagaaaaag 500

                                                                       
Query: 301 aagcttccagtagaaaagatacacccaaaagcgtgagtgtaggctttaaagtgctgaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagcttccagtagaaaagatacacccaaaagcgtgagtgtaggctttaaagtgctgaaga 560

                                                                       
Query: 361 agcaggacgtctccaagtgtgggtccaggctgtggaagactcctcgagagtcgtgctcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcaggacgtctccaagtgtgggtccaggctgtggaagactcctcgagagtcgtgctcac 620

                                                                       
Query: 421 tgctttttatgtttttgtctgttttttcgttttttttttttgttttgtttttttacaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgctttttatgtttttgtctgttttttcgttttttttttttgttttgtttttttacaata 680

                                                                       
Query: 481 atcatatataggattttagagggttttgaagttatgacattcaaagagttgctaagagac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcatatataggattttagagggttttgaagttatgacattcaaagagttgctaagagac 740

                                                                      
Query: 541 ccaaatgagaccacaaggtgcttccttaggggtccccaataaggctataattgataagg 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccaaatgagaccacaaggtgcttccttaggggtccccaataaggctataattgataagg 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)