Query= MSMg01no122_c12.b1 MSMg01no122_c12.b1 CHROMAT_FILE:
MSMg01no122_c12.b1 PHD_FILE: MSMg01no122_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:19 2005
(792 letters)
>mm_chr2_52770005_52771194
Length = 1190
Score = 1413 bits (731), Expect = 0.0
Identities = 781/807 (96%), Gaps = 20/807 (2%)
Strand = Plus / Plus
Query: 4 ggaattcttgaattcttttttccat-ccaaatttatttttataagcctttagcagaatac 62
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 186 ggaattcttgaattcttttttggaagccaaatttatttttataagcctttagcagaatac 245
Query: 63 tgcttgttcttgggataattggctctggccttgtctttcaaatatgctttgaccaacgac 122
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tgtttgttcttgggataattggctctggccttgtctttcaaatatgctttgaccaacgac 305
Query: 123 cagttgagagaaacaggataaatgaaattgggaaattaagaaaatggctatttttttttc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cagttgagagaaacaggataaatgaaattgggaaattaagaaaatggctatttttttttc 365
Query: 183 ttcttaaaatgagaacaaaagtcatgaggggggtcttttatttttcagataatttttaag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttcttaaaatgagaacaaaagtcatgaggggggtcttttatttttcagataatttttaag 425
Query: 243 aacccctgcctttagcagaaaggttttgcttaagtgttgtcactctggagagaggggagg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aacccctgcctttagcagaaaggttttgcttaagtgttgtcactctggagagaggggagg 485
Query: 303 attctgaagtctttaatgtggttctacaaatgtaagcctggctgtttaatcatggcattt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 attctgaagtctttaatgtggttctacaaatgtaagcctggctgtttaatcatggcattt 545
Query: 363 ctgcagagacgaatctctgtgcccacacgtctcctccttctctcatttcttttaatgtct 422
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 546 ctgcagagacgaatctctgtgcccacacgtctcccccttctctcatttcttttaatgtct 605
Query: 423 tagatgtggactaagccttggaacagccactgctaagtgtttccacattggaaaaattga 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tagatgtggactaagccttggaacagccactgctaagtgtttccacattggaaaaattga 665
Query: 483 agagtttggctggatacaattctgactttataggagggaattacatgtcccttaaggctg 542
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 666 agagtttggctggatacaattctgactttataggagggaattacttgtcccttaaggctg 725
Query: 543 c----------at------tatttgctatttggacctaggtggcctaaaccaaacaaaag 586
| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 cgttagaagtcatatactttatttgctatttggacctaggtggcctaaaccaaacaaaag 785
Query: 587 aaaacaaaacaacacaaaaaaa-tggagggagactgaagagctggtcatttctcaaatga 645
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 786 aaaacaaaacaacacaaaaaaaatggagggagactgaagagctggtcatttctcaaatga 845
Query: 646 atgcattgaacaatattgtcactgacccactcgttgttgcaggacttgctggctaaggca 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 atgcattgaacaatattgtcactgacccactcgttgttgcaggacttgctggctaaggca 905
Query: 706 tccagtcagactctctctgtgcactgttaattcgtggctgtcatccctctcgtttctgaa 765
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 tccagtcagac-c-ctctgtgcactgttaattcgtggctgtcatccctctcgtttctgaa 963
Query: 766 gaaagcatttatctagaggcttgcagg 792
|||||||||||||||||||||||||||
Sbjct: 964 gaaagcatttatctagaggcttgcagg 990
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 792
Length of database: 1190
Length adjustment: 10
Effective length of query: 782
Effective length of database: 1180
Effective search space: 922760
Effective search space used: 922760
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_c12.g1 MSMg01no122_c12.g1 CHROMAT_FILE:
MSMg01no122_c12.g1 PHD_FILE: MSMg01no122_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:19 2005
(747 letters)
>mm_chr2_52895057_52896203
Length = 1147
Score = 1253 bits (648), Expect = 0.0
Identities = 657/660 (99%), Gaps = 1/660 (0%)
Strand = Plus / Minus
Query: 88 gttctgtccagagccatccctgagcagaacaagcctgcagggttgtgccaggcaacatgc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1147 gttctgtccagagccatccctgagcagaacaagcctgcagggttgtgccaggcaacatgc 1088
Query: 148 ttagccgcaaggcagcagcttaagccaactgtgcggctgcacaaagcagggcttgttaag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1087 ttagccgcaaggcagcagcttaagccaactgtgcggctgcacaaagcagggcttgttaag 1028
Query: 208 gagagatggttaaaagtcacatcagctattccctccttaccttcttggggttggggctgg 267
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 1027 gagagatggttaaaagtcacatcagctattctctcctta-cttcttggggttggggctgg 969
Query: 268 ggctggggccagggcaggggcagctgtgaaacatcaacagctgatgtcagcatgcacctg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 ggctggggccagggcaggggcagctgtgaaacatcaacagctgatgtcagcatgcacctg 909
Query: 328 ggaggacaccccagtgattttagagggttctagaaatgccccatgtcatttgcaaggcct 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 ggaggacaccccagtgattttagagggttctagaaatgccccatgtcatttgcaaggcct 849
Query: 388 gctttgttagggggcctaagcagtaagggcaagactccctgctctgtgcaaggggaacca 447
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 848 gctttgttagggggcctaagcagtaagggcaagactcgctgctctgtgcaaggggaacca 789
Query: 448 acaatatcagtagccgtcaaaggaacatcatttttgtgtaggcaagttttattaagtgct 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 acaatatcagtagccgtcaaaggaacatcatttttgtgtaggcaagttttattaagtgct 729
Query: 508 gtagattttttttcccctttgtcttctcatgaagatggcctccaacgcatgtctgcttgg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gtagattttttttcccctttgtcttctcatgaagatggcctccaacgcatgtctgcttgg 669
Query: 568 agatctggcaaaaactaacacaaaggaaagagtcttctgatgtgacacctgatgctgagc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 agatctggcaaaaactaacacaaaggaaagagtcttctgatgtgacacctgatgctgagc 609
Query: 628 actgaagaggaagtgacagccaggagtgtaaacccatccaccttaccttcctggttacag 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 actgaagaggaagtgacagccaggagtgtaaacccatccaccttaccttcctggttacag 549
Query: 688 ctgggtccaggtagcctttgagcttctgtatgtacgtatggggagggttcttcacctgga 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ctgggtccaggtagcctttgagcttctgtatgtacgtatggggagggttcttcacctgga 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 747
Length of database: 1147
Length adjustment: 10
Effective length of query: 737
Effective length of database: 1137
Effective search space: 837969
Effective search space used: 837969
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
