BAC Information

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BAC

Clone NameMSMg01-122D08
Chromosome2 (Build37)
Map Location 49,110,065 - 49,110,666
singlet/doubletsinglet
Overlap geneMbd5
Upstream geneLOC383691, LOC100041457, LOC383692, Acvr2a, Orc4l, LOC100041508
Downstream geneLOC100042719, LOC666709, LOC435666, Epc2, Kif5c, 2310010M24Rik, Lypd6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122D08.T7 (MSMg01no122_d08.b1)MSMg01-122D08.TJ (MSMg01no122_d08.g1)
ACCAG332128AG332129
length1,1821,410
length of high quality
(start - end)		803 (36 - 838)58 (72 - 129)
definitionCHROMAT_FILE: MSMg01no122_d08.b1 PHD_FILE: MSMg01no122_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:25 2005CHROMAT_FILE: MSMg01no122_d08.g1 PHD_FILE: MSMg01no122_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTCCCTTNNNNAGCATTGGGCGCTATAGACTCCTATAGGGAGAGGATCC
GCGGAATTCCCTTTCACATCAGCTCCTTTCTCCATCTTTTCGGAATCCTC
CAGTTCCTTTGGAGATCAGACAGAATATAGGCAACAAAAGTAAGCTGGCT
CATCATACAGAATTTTCGGCCTATCATGTCAGAATTTTAGGTCTAAGATT
TTTAAAGAAAAAATTTTAAGGCCCTAAGAATACTTAAGTATTTTATAATG
TTGCACACCTTCTAAAACAAAGATGGCAAATAATACCTATATATTAATTC
CCATTAATTTGTATTGGCTGCTTAGAGAGTTGTGTTGGAAAGAACGCTGA
GAGAGCTGCACTCTGTGAGAAATGCCAGAGAGTCTACGGAGGCACAGGAG
CTGGAAGTGCCACCAATCATACTATATATTTGCCATATCTATTTTGAGAC
TTAAAAGCATATTAGCAATTATACTTAGATTCACTTGCAATCAGAGATAC
ACTTAAGGGATAATTACATACTTAAAATGAATCAACTTCTACTATTTGCA
AGAGAGTATACAGGTCAAATCATATAATAACTTTGAAGACATCATTTCTC
CATCATGGGCACACAGATTCTAGCTAGGAGAGGGCTCAGCATGTGTTCCC
AGTTCCCGACTGGAATATGGAGACTTCCTGATTCTAGTATCGTAGGAGTT
CTTTGAAAGAGTAAGTATTTGGGGACTAAATAACATAACAGAAGACACAG
GATACACTTAACTGAGGCTAATTTTCTTGTAAAAGAGAGATCATTANACG
TTACTAGTTAAAGGAACAAGGGATTAAGATATGCAGTTCGTGGTGGATAG
TGAGAAAAGAGTTTAATGTAGTAGCATCACTAGCAGGACCATGGACCTAC
TTGCATTTTAAAATTATCAATATATTATATAATTATCTATAGTCCCATGA
TTATGATACAGATAGAAGTGGCATTTTTTTATTATCCGCTAACAAAATTT
ATACAATAAGTGTGGCTTTAAAAAGAATTTCTTCTATATCTTGGGAAAAA
ATTGGTATTATGTTTTAAAATAATTAGAATGGTTATAATAAACACAAAAA
TCCGGTCTGAAGTTTAAAGTGACAAGGGGCCAAAGAACCGTTTAGCACCG
GGGGAAAACCTCTTGGGGCTTGGGCCAGAAAC

NNNNAAGAGTGGAGGCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGAAGACTCTATCTTGTATATTCTGTATG
GGTTTGGGGGTTGTTTTTTGGGGGGGNACCCCCNNNNCCCNNCCNNCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CNCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCT
ACCCCTCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTCTCCCCCTTTTC
CTCTTCTCTTTCCTCCCCCTTCCTTCTTCCCTCTCTTCTTCCCTTTTCTC
CTCTCTCTTTTTTTTTCTCCTCCTCCTCCTTCTCCCCCTTTCTCTCCTCC
TCTCNCCCTCCCTCCCCTCTTTTTTTTCCTCCTCCTCTTTCCCCTTCTTT
CCTCCCTTTTCTATCATTTATCTTTTCCTTCCTTCTTCTCCTTTTCTTCT
CCCCTTTCTCCCTCCGCCTTCTCTTCTTCTCCCCCCCTCTCTTCTCCCTT
CTCTCCTCTCCCCTCCCCTATTTATCTTTTCTATTTCTTCCCTTTTTCTT
TTCTCTTCATCCCTCTTTCACTTCCTTCTTCTCACTCCTCTCCCTTCTCT
CCCTTTTCCCCTTCCTTCTCACTTCTTCCTCTATTTCTCCTCTCCTCTCT
TCTTCCTCTCTCTTTCTCTCTTCTCTCTCTCCTCTCTTTTCCTTTTTCTC
CCTCATCACCTCTTCTTCCTCCTTCTTCTCTGTTTCTCTCTCTCTCTCCT
TCACTCTTCTCTNCCTCTCTCCTTCTCTTTATACCTTCTTCTCTTTTCTT
TCCCTTTTTCCCTCTTCCTCTCCTCTCTTTTCCCTCTATTTTTCTCCCCT
CTCCTTCCTCCTCTATTCTCTCCCCTTTCTCCCCTCTTTCCCCTCTCCCC
TCTTCCTCTCTCCCTTTCTCCATCTCTCCTCCACTCTTTTTTTTTTCTAC
CTTCTACTTCTCTTCTTTCGCCTCTCTACTCTCTTCCTTTCCTCTATTCT
TCTTTCTCTTTCTCTCCTTCCTCTCTCCTCCATCTCTTTGTTGTCCTGTC
TTAGTCTCCCTGCTCTCTCGTTTTTGTTCGTTGTTTTTCCCTATCTCGTC
TCCTTTCGTCTCCGCTTTCTCTTGTTCGTTCGTCTGTTTCTGTGTGACCT
CTTCTCTTGTCTGCTTCACCTATGTGCTCTCCATGCTTCTGTGCGTCCGG
GTCTTCTTCCGCGCTGCCCGTCGTTGGTCCCCTCTCGCTGTCCATTTCTG
TGTGCCTCTTCTCATTGTGCTTCTCGCTACGCTCTGCCTTCTCGGCTGTC
TTGCCTATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_d08.b1 MSMg01no122_d08.b1 CHROMAT_FILE:
MSMg01no122_d08.b1 PHD_FILE: MSMg01no122_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:25 2005
         (803 letters)



>mm_chr2_49109464_49110666
          Length = 1203

 Score = 1151 bits (595), Expect = 0.0
 Identities = 600/602 (99%)
 Strand = Plus / Minus

                                                                        
Query: 202  agtattttataatgttgcacaccttctaaaacaaagatggcaaataatacctatatatta 261
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203 agtattttataatgttgcacaccttctaaaacaaagatggcaaataatacctatatatta 1144

                                                                        
Query: 262  attcccattaatttgtattggctgcttagagagttgtgttggaaagaacgctgagagagc 321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1143 attcccattaatttgtattggctgcttagagagttgtgttggaaagaacgctgagagagc 1084

                                                                        
Query: 322  tgcactctgtgagaaatgccagagagtctacggaggcacaggagctggaagtgccaccaa 381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 tgcactctgtgagaaatgccagagagtctacggaggcacaggagctggaagtgccaccaa 1024

                                                                        
Query: 382  tcatactatatatttgccatatctattttgagacttaaaagcatattagcaattatactt 441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 tcatactatatatttgccatatctattttgagacttaaaagcatattagcaattatactt 964

                                                                        
Query: 442  agattcacttgcaatcagagatacacttaagggataattacatacttaaaatgaatcaac 501
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963  agattcatttgcaatcagagatacacttaagggataattacatacttaaaatgaatcaac 904

                                                                        
Query: 502  ttctactatttgcaagagagtatacaggtcaaatcatataataactttgaagacatcatt 561
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903  ttctactatttgcaagagagtatacaggtcaaatcatataataactttgaagacatcatt 844

                                                                        
Query: 562  tctccatcatgggcacacagattctagctaggagagggctcagcatgtgttcccagttcc 621
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843  tctccatcatgggcacacagattctagctaggagagggctcagcatgtgttcccagttcc 784

                                                                        
Query: 622  cgactggaatatggagacttcctgattctagtatcgtaggagttctttgaaagagtaagt 681
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783  cgactggaatatggagacttcctgattctagtatcgtaggagttctttgaaagagtaagt 724

                                                                        
Query: 682  atttggggactaaataacataacagaagacacaggatacacttaactgaggctaattttc 741
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723  atttggggactaaataacataacagaagacacaggatacacttaactgaggctaattttc 664

                                                                        
Query: 742  ttgtaaaagagagatcattanacgttactagttaaaggaacaagggattaagatatgcag 801
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 663  ttgtaaaagagagatcattaaacgttactagttaaaggaacaagggattaagatatgcag 604

              
Query: 802  tt 803
            ||
Sbjct: 603  tt 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 803
Length of database: 1203
Length adjustment: 10
Effective length of query: 793
Effective length of database: 1193
Effective search space:   946049
Effective search space used:   946049
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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