BAC Information

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BAC

Clone NameMSMg01-122I22
Chromosome2 (Build37)
Map Location 110,115,762 - 110,116,456
singlet/doubletsinglet
Overlap geneBbox1
Upstream geneMett5d1, Kif18a, Bdnf, LOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797
Downstream gene1110018M03Rik, LOC668799, Slc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122I22.T7 (MSMg01no122_i22.b1)MSMg01-122I22.TJ (MSMg01no122_i22.g1)
ACCAG332386AG332387
length1,0781,071
length of high quality
(start - end)		716 (86 - 801)762 (83 - 844)
definitionCHROMAT_FILE: MSMg01no122_i22.b1 PHD_FILE: MSMg01no122_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:08 2005CHROMAT_FILE: MSMg01no122_i22.g1 PHD_FILE: MSMg01no122_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCTTTCTTNNNAAGCAATGGGCGCTATAGACTCCTATAGGGAGAGGATC
CGCGGAATTCACAATGACAGCATCCCCATGAATGCGGGCACGAGCGGGAA
GGTGAGAGCTTGCACCTTCAACTGCAAGCATAAAAAGAAAATCTGCTAGT
ATAGTATGGCCTGAAGCTCTCACAGTCTACCTCAGTAATGTATTTCCTTT
CATGAGGCCATACCTCATAAACCTGCCCAAACAGTGTCACCTACTGGACA
CCAAGTGTTCTGATATCTCTGCCTATGGGGAAAATTCTCATTCAAACCCC
TACAAAGGTTTTGCTATGGATGAACATGATTTTAGAATAGCTCTACTCAG
AGGTGCTGCTACCATCTAGATGTCCCAAATGTCACTATCCTATTCACTTA
AAACTGTTCACCTTATATTGTATGAATCTTCTGCAGTAAATCAAATGGAT
AAAACTTTTTAAAAATGACTCATAATCCCAATGTGTACCTCCCTACCCAT
CCTGTGGGAGAGGCTAGCATGTGTGTTATTCTTTAGTGTCTTGACAAGAG
AAATACAGAAGTGCCAGTTCAGAAAGAGTCACTTAAGAGAAAGGTTAAGA
TTTTTCTGGCTGTTAGTCATTATGTTAATTATTTCATAAAATGGAAAGTT
TCCATTTCCCCTCTCATAGCAAATGCATTGTAACACATTTCCTCTGGCTT
AGCGTCAACCTTTTAAAACACATGTTTCTTGTATTTTGCAGACACACTTG
GCAAGTGCAGGACAAGATTGATGCCAACAATGTGGCTTATACAACTGGGA
AGCTCAGCTTCCACACTGACTACCCAGCCCTCCACCATCCACCTGGGGTA
AGGTGAGCTTCAACACATTTTCCACAAGCCAGGCCAAGAAAGAAATGTTC
TCCTGGACCGAGTCTAGATTATATAACTCATTGCTGGATATGACTTATGT
CCCACCTTCTTTTCCTGAAAATCAATCTGGAACTCACAAAACGTGTTAAT
CCCTAAAGTTCTGAAATGGTCCTCCCCTTTTTAAAAGGGAAAAAGGAAAT
TTTTTCACCCCACCTTTTCTTCTTGGGA

TTTCTCTNNNNAATCAAGTGAGGCTGGXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCCTTCATTCTGAGTTTTACCTTGCACA
TATTAAGCTTTTGTCTTTGTACTGAAGTATTTTATGGATGTTTAAAATTA
TTTTTGTTTTATGGTATGTATATGGTATTTTGTTTACATGTTTTTCTGTT
CACCTTGTGCATGTCCTGTGTTCAGGAGACCAGAAGATTTTAGATCCCTT
GGAACAGGAATTGCAAATTGCTGAGAACTGCTATGTGGGTGGTAGAAATC
ACAGCCAGCAGCAAGTGCTTTTAACAGTTGAACTATCTCTCCAGAATCAT
TATATGAATTTTGGCAGCTATATAGTGCTGCCTGTTTAGTGTTTATTTTC
TTCTCCCTACTCCCTCTCTTCCTTCTCTTTCTTTCCTACTGTATTTTCTC
TGTCTGTCTCTCCTTCCTTTATTTTGTGTGTGTTGTGTGCACATGCTATG
TGGGTGTATTAGCCCATTCATTCATACGTAGAGAACAGAGGTTAGTTTTA
GGTATCTTCCTTTATTGCCTTCGACTTTTGTTTTTGGAGTAAGGCTTTTC
ACTGAACCTGCAACCTACTGTTTTGGCTACACTGGATAGCTAGTTAGCTC
CTGAAATTCTCCTGTCTCCACATCTTTCTTAAGTGTTGAGGTAACAGACG
CTTGCTGCTGTGCCCAGCTCTTATATGGATACTGTGGATCAGAAGACGCA
TCCCTCTTGTTTGCTTATCTAGTACTTTACCAACTGAGCTGTCTCTCCAT
TCCAGCTTTTCTTTTTCTTTTTTCTTTCTTCCATTCCTTTTTTATTTTTT
TTAAAATCTTTCTTTATTCTTCCCAGGTAAGGTCTCACTTGTATAGTCTA
TATACAGCCTACTTTTGGCTCAAACTATTATGTAATACAAGACTTGTTTT
CCAACTTTCAAATTTTTATCCCCCTGCTTTCTGATTTCTGGGATAACTTG
GTAAATGTCCCAACCCTTCCTTGGAAACCACCTTTTCCCCTTTAACCCTT
TATTTCCCCTTTTACGGAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_i22.b1 MSMg01no122_i22.b1 CHROMAT_FILE:
MSMg01no122_i22.b1 PHD_FILE: MSMg01no122_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:08 2005
         (716 letters)



>mm_chr2_110115341_110116456
          Length = 1116

 Score = 1305 bits (675), Expect = 0.0
 Identities = 690/695 (99%)
 Strand = Plus / Minus

                                                                        
Query: 22   agcttgcaccttcaactgcaagcataaaaagaaaatctgctagtatagtatggcctgaag 81
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1116 agcttgcaccttcaactgcaagcataaaaagaaaatctgctagtatagtatggcctgaag 1057

                                                                        
Query: 82   ctctcacagtctacctcagtaatgtatttcctttcatgaggccatacctcataaacctgc 141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 ctctcacagtctacctcagtaatgtatttcctttcatgaggccatacctcataaacctgc 997

                                                                        
Query: 142  ccaaacagtgtcacctactggacaccaagtgttctgatatctctgcctatggggaaaatt 201
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 996  ccaaacagtgtcacctactgggcaccaagtgttctgatatctctgcctatggggaaaatt 937

                                                                        
Query: 202  ctcattcaaacccctacaaaggttttgctatggatgaacatgattttagaatagctctac 261
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 936  ctcattcaaacccctacaagggttttgctatggatgaacatgattttagaatagctctac 877

                                                                        
Query: 262  tcagaggtgctgctaccatctagatgtcccaaatgtcactatcctattcacttaaaactg 321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876  tcagaggtgctgctaccatctagatgtcccaaatgtcactatcctattcacttaaaactg 817

                                                                        
Query: 322  ttcaccttatattgtatgaatcttctgcagtaaatcaaatggataaaactttttaaaaat 381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816  ttcaccttatattgtatgaatcttctgcagtaaatcaaatggataaaactttttaaaaat 757

                                                                        
Query: 382  gactcataatcccaatgtgtacctccctacccatcctgtgggagaggctagcatgtgtgt 441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756  gactcataatcccaatgtgtacctccctacccatcctgtgggagaggctagcatgtgtgt 697

                                                                        
Query: 442  tattctttagtgtcttgacaagagaaatacagaagtgccagttcagaaagagtcacttaa 501
            |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696  tattcttcggtgtcttgacaagagaaatacagaagtgccagttcagaaagagtcacttaa 637

                                                                        
Query: 502  gagaaaggttaagatttttctggctgttagtcattatgttaattatttcataaaatggaa 561
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636  gagaaaggttaagatttttctggctgttagtcattatgttaattatttcataaaatggaa 577

                                                                        
Query: 562  agtttccatttcccctctcatagcaaatgcattgtaacacatttcctctggcttagcgtc 621
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576  agtttctatttcccctctcatagcaaatgcattgtaacacatttcctctggcttagcgtc 517

                                                                        
Query: 622  aaccttttaaaacacatgtttcttgtattttgcagacacacttggcaagtgcaggacaag 681
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516  aaccttttaaaacacatgtttcttgtattttgcagacacacttggcaagtgcaggacaag 457

                                               
Query: 682  attgatgccaacaatgtggcttatacaactgggaa 716
            |||||||||||||||||||||||||||||||||||
Sbjct: 456  attgatgccaacaatgtggcttatacaactgggaa 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 716
Length of database: 1116
Length adjustment: 10
Effective length of query: 706
Effective length of database: 1106
Effective search space:   780836
Effective search space used:   780836
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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