BAC Information

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BAC

Clone NameMSMg01-122J11
Chromosome2 (Build37)
Map Location 95,468,006 - 95,468,626
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043259
Downstream geneLOC100042843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122J11.T7 (MSMg01no122_j11.b1)MSMg01-122J11.TJ (MSMg01no122_j11.g1)
ACCAG332409AG332410
length1,1431,129
length of high quality
(start - end)
631 (125 - 755)680 (132 - 811)
definitionCHROMAT_FILE: MSMg01no122_j11.b1 PHD_FILE: MSMg01no122_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:13 2005CHROMAT_FILE: MSMg01no122_j11.g1 PHD_FILE: MSMg01no122_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATAAAATTNNNNGAACACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGTAGATGACAATGCCGTTCAACAATGTAAAAATGCTG
GACATACCTGTGTGAGGCCTATGCTCTCTTCAGTCAACAAATCTGGTACC
CTGTTCTAGAACACTCTGGCTTCCTGAGTTATGCACAAGAAGTTAGTATG
GTTTGTAATACTCAGCTTAAGGTAATGTATTAAAGCAACTACATGAGTGA
CAGTGACCTTGGATTCGCTGCTCCCCCTGCTAAAGAAATATTTTGTGTAT
GAGAGGCAAGAATGAAAATAGAAGAGAAGGAAGGTGGAGATGTAGCAGTG
AGAGTCAGAGACTTTAGAGGGGAGAAAGGGCAAGTGGCCACAGAACACAT
TCTTCCCAAGAACCGCAGGGAAGAGAACAAAACTAACAACAACCCGATCT
CTGACTCTTTGTCTTTACCGCAGGGAAATAGATTTTAGATTGCTCACTTC
CAGAAAATGAAACAATGACTTTAATAAAATTGATAGCTGTGTAAGGTTTT
CTAAATGCTTCTTGAATGTACAATTGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGATCATACTATTAGAGAGAGAGAGATCATATTACAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGATCATACTATTACTTATAGTTAACC
TGGCTGTAATGTAAACATTGTAAGTCAATGTTTCCATCTCAAAATCTACA
AAGTAATCATCCCAAAAGCCTGTTGTGCCTTACAGGGCAACACTGAGAGC
CTCTGAGAGACAGGACCTATGGCTCTCTGGTGGGCAGCTACTTTGTGGGG
ACACACCCACCTGCCCAAAACTAAATTTTCTCCCTGCCTATGCCCCCTTC
CCCAGGGAACAAATCCCCTGGTTTTAAAATTTTCCATCAACATTTCATAT
TAGTCATTTTGCATTTCCGGTCATATTTTATAATAGAAGATTTTCTTATT
CCGGTATTTCTCCCTGTGTTTAAACAAAATTTGGACCCATTTTTTTTAAA
ATTTTATTTAAACCTGTTTTTTCCCCCTATAAAATTCCTTTCCTTTAAAT
GTCCTTTTCCCCTTATAATTGCCGGAAATTTGGTGGGGTTCTT
CCAAAAATTNTNTTTATGATGTGATGCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAAGAACGTAAAGGCACAA
CATGCTCAAATATATGGACCTTAAGGAAAACAGTTCTAAGAGGCGAGTTC
CTAGCACTAAAAAACCTCCATAAGAAATTAGAAAGTTCTCATACCAGCAA
TTCAAAAGTACACCTGAAAACTAGAAAAAGAGTCAAGTATACCAAAGAGG
AGTAGAAGACAGGCAATAATCAGTAATCAGGGGTGAAATTTAATAGTTAG
AAACAAAGAAAACCGTATAATGAATCAATGAGCCAAGAGCAGGTTCTTGG
AGAAAAGCAACAAGATAGATAAACCCTTAGCCAAACTAACCAATAGACAT
AGAGAAATCATCCAAATAAACAAAATTAGTAATGTAAAGGGAGACATAGC
CACAGACACTGGGGAAATTCAAAGAATCATTAGGCCTTACTTCAAAAGCT
CCACAAAATTGGGAAATCATAATGAAGTTGATGATTTTCTAGACAGACAC
CATGTATCAAAATTAAATCAATATCAGACAAACTATTAAAACAACCTTAT
ACCCCCTAAAGAAATAGATGTTATCATTAAAATCTCTCAACCATGAAAAA
CCATGGATCAGATAGTTTTAGTGGAAAATTTTATCAGAATTTCAAAGAAG
AGCTAAAACCAATATTCCTCAAACTATTCTACAAAATGGAAATAGAAGGA
ACACTGCCAAACTTCTTCTAAGAGACCACAATCACCCTGATACCTCAACA
AAGAAAGACCTTCAGACAGATTTCTATTATGAATATTGAAGCAACAATAG
TCAACAAAGTACTCACAAACTGAATCCAGGAACACATAAAAGACATCTTT
CCTCAAGATCAAGTAGGCTTCATCCCAGGGATGCCGGTATGGTACAATAT
ATGAAAAATCCCCCAATGCAATCCTCCATTATAACCACCACCAAAAAACC
CCTGGACCACCCATTTAAATGGTTTTGAATAAATTCCCGAAAAACCTTTC
CAGTTAAAGAAAACCTAAGAAAATCCTTAAAATTATCCGGGCCCATATTC
TTAACCCTTAATCCAGAGCATTTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_j11.b1 MSMg01no122_j11.b1 CHROMAT_FILE:
MSMg01no122_j11.b1 PHD_FILE: MSMg01no122_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:13 2005
         (631 letters)



>mm_chr2_95467976_95469006
          Length = 1031

 Score = 1029 bits (532), Expect = 0.0
 Identities = 602/638 (94%), Gaps = 24/638 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcttcagtcaacaaatctggtaccctgttctagaacactctggcttcctgagttatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tctcttcagtcaacaaatctggtaccctgttctagaacactctggcttcctgagttatgc 592

                                                                       
Query: 61  acaagaagttagtatggtttgtaatact-cagcttaaggtaatgtattaaagcaactaca 119
           ||||  |||| |||||| ||| |||| | |||||||||||||||||||||||||||||||
Sbjct: 591 acaattagtttgtatggcttgcaata-tgcagcttaaggtaatgtattaaagcaactaca 533

                                                                       
Query: 120 tgagtgacagtgaccttggattcgctgctccccctgctaaagaaatattttgtgtatgag 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 532 tgagtgacagtgaccttggattcgctgctccccctgctaaagaaatattttgcgtatgag 473

                                                                       
Query: 180 aggcaagaatgaaaatagaagagaaggaaggtggagatgtagcagtgagagtcagagact 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aggcaagaatgaaaatagaagagaaggaaggtggagatgtagcagtgagagtcagagact 413

                                                                       
Query: 240 ttagaggggagaaagggcaagtggccacagaacacattcttcccaagaaccgcagggaag 299
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 412 ttagaggggagaaagggcaagtggccacagaacacattcttccgaagaaccgcagggaag 353

                                                                       
Query: 300 agaacaaaactaacaacaacccgatctctgactctttgtctttaccgcagggaaatagat 359
           ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 352 agaacaaaactaacagcaaccagatctctgactctttgtctttaccgcagggaaatagat 293

                                                                       
Query: 360 tttagattgctcacttccagaaaatgaaacaatgactttaataaaattgatagctgtgta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tttagattgctcacttccagaaaatgaaacaatgactttaataaaattgatagctgtgta 233

                                                                       
Query: 420 aggttttctaaatgcttcttgaatgtacaatt------gagagagagagagagagagaga 473
           ||||||||||||||||||||||||||||||||      ||||||||||||||||||||||
Sbjct: 232 aggttttctaaatgcttcttgaatgtacaattgagagagagagagagagagagagagaga 173

                                                                       
Query: 474 gagagagatcatactattagagagagagagatcatattacagagagagagagagagagag 533
           ||||||||||||||||||  |||||||||||||||| |              ||||||||
Sbjct: 172 gagagagatcatactatt--agagagagagatcatact--------------agagagag 129

                                                                       
Query: 534 agagagagagagagagagatcatactattacttatagttaacctggctgtaatgtaaaca 593
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 128 agagagagagagagagagatcatactattacttaaagttaacctggctgtaatgtaaacg 69

                                                 
Query: 594 ttgtaagtcaatgtttccatctcaaaatctacaaagta 631
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 68  ttgtaagtcaatgtttccatctcaaaatctacaaagta 31


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 118
Number of extensions: 19
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)